PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62017107-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

NF-YB

Protein Properties

Length: 564aa MW: 60901.2 Da PI: 5.4741

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62017107-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	105.2	4.5e-33	47	141	2	96
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 reqd+++Pi+n++r+m+++lPa a i+++aket+qec+s+fi +t+ea++ +e+rk +++dd++ a+ + fe y++ l++yl +yre+eg+ AUR62017107-RA 47 REQDQHIPISNIIRVMRQILPASANICDEAKETIQECISKFINHITEEANKIRSEEQRKVLTADDIVAAMFKKRFESYADLLSTYLYRYREAEGK 141 89******************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence
MEEGNSSNKN NLTSSMKNKS RVSKLATGRP PLHPSSLTNA AAPRRRREQD QHIPISNIIR 60 VMRQILPASA NICDEAKETI QECISKFINH ITEEANKIRS EEQRKVLTAD DIVAAMFKKR 120 FESYADLLST YLYRYREAEG KDDFIQVLRL RLLRPDAGMV PPPVMADPYF YPHDVGTVNS 180 TMTNFDAGSS SFGSTFNSLM PNFDAGSSSF GSTFNSTMPN FDAGSSSFGS TVNSTMTNFD 240 AGSSSCGSTV NSTMMNFDAE SFGSTFNSTM TKFDVGSSSF GSTVNSTMTN FDAGSSSYGS 300 TVNSTMTNFD AGSSSFGKTV NSTMTNFDAG SSSFGSTFNS TMMNFDAGSS CNSIGGGCNE 360 YDGHWYGVTG IGGGRRSEYT GQGYDSTINP MMTNFVGSYN NNFGGYTGQG YDSTINPMAD 420 IDGGHGMVDI SGCHGESVNQ RYGDGLVVIG GGSGQYADHG YGVDIGGGGA GENVDQGYAS 480 TTNNSMMSFG VLEIANQNED FKEMLVRQNM DLWSRRNDKI FNGKELLHHM IIERVQKLVE 540 DCVKYLAKIY GAVGMRRKRS PKV*

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence

MEEGNSSNKN NLTSSMKNKS RVSKLATGRP PLHPSSLTNA AAPRRRREQD QHIPISNIIR  60
VMRQILPASA NICDEAKETI QECISKFINH ITEEANKIRS EEQRKVLTAD DIVAAMFKKR  120
FESYADLLST YLYRYREAEG KDDFIQVLRL RLLRPDAGMV PPPVMADPYF YPHDVGTVNS  180
TMTNFDAGSS SFGSTFNSLM PNFDAGSSSF GSTFNSTMPN FDAGSSSFGS TVNSTMTNFD  240
AGSSSCGSTV NSTMMNFDAE SFGSTFNSTM TKFDVGSSSF GSTVNSTMTN FDAGSSSYGS  300
TVNSTMTNFD AGSSSFGKTV NSTMTNFDAG SSSFGSTFNS TMMNFDAGSS CNSIGGGCNE  360
YDGHWYGVTG IGGGRRSEYT GQGYDSTINP MMTNFVGSYN NNFGGYTGQG YDSTINPMAD  420
IDGGHGMVDI SGCHGESVNQ RYGDGLVVIG GGSGQYADHG YGVDIGGGGA GENVDQGYAS  480
TTNNSMMSFG VLEIANQNED FKEMLVRQNM DLWSRRNDKI FNGKELLHHM IIERVQKLVE  540
DCVKYLAKIY GAVGMRRKRS PKV*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	3e-31	NF-YB family protein