PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62016442-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 413aa MW: 46907.9 Da PI: 4.369

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62016442-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.6	5.8e-17	174	258	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ aL++a e+ rl+r++l+ W+ev++k+ +e+ +er+ qC+++++ l+k+ykk+ ++ + s++s +++++++++ AUR62016442-RA 174 WTEKETFALLDAWGERFLRLGRKSLRSDEWQEVAEKVsQETNVERTDAQCRNRLDTLKKKYKKESTRLTAGGSGVS-QWVFYRRMD 258 ***********************************88999************************976666.9****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MEDDKGNGSR YISKTYGQND QQEYGSSLRP KGSGFSDRYP RESNQYPGDE EEDIEDEELG 60 EEDVERNGVR MIGKDTYDDE EDEEEEGEGE GEDEEEEDDS DDEEDDDNDD HEDGKRFNGK 120 AEDISNGKPR KKRKLKTIIS NYEFAPRVPT PTVQKATLPQ AQPTSSGQNS VGDWTEKETF 180 ALLDAWGERF LRLGRKSLRS DEWQEVAEKV SQETNVERTD AQCRNRLDTL KKKYKKESTR 240 LTAGGSGVSQ WVFYRRMDML LSSSHQQTGL SCGIDSGEYV FMNSNVYLNR ANGLDEMRDS 300 PGNSDYLRDE DGDDSDGLPP KGKKNKGRRV DGSSVQLLAD SIEKFSERRH NMDPAISIAS 360 LLSTAHRSNL RCPSFFMSWF FLTIQDPEPQ YNPKIGHMHS DKTMQMLYCS SL*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MEDDKGNGSR YISKTYGQND QQEYGSSLRP KGSGFSDRYP RESNQYPGDE EEDIEDEELG  60
EEDVERNGVR MIGKDTYDDE EDEEEEGEGE GEDEEEEDDS DDEEDDDNDD HEDGKRFNGK  120
AEDISNGKPR KKRKLKTIIS NYEFAPRVPT PTVQKATLPQ AQPTSSGQNS VGDWTEKETF  180
ALLDAWGERF LRLGRKSLRS DEWQEVAEKV SQETNVERTD AQCRNRLDTL KKKYKKESTR  240
LTAGGSGVSQ WVFYRRMDML LSSSHQQTGL SCGIDSGEYV FMNSNVYLNR ANGLDEMRDS  300
PGNSDYLRDE DGDDSDGLPP KGKKNKGRRV DGSSVQLLAD SIEKFSERRH NMDPAISIAS  360
LLSTAHRSNL RCPSFFMSWF FLTIQDPEPQ YNPKIGHMHS DKTMQMLYCS SL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	135	PRKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	6e-52	Trihelix family protein