PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62016322-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 561aa MW: 65297.2 Da PI: 8.6192

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62016322-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.7	3.5e-22	59	142	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++ +w++ + leHnH l AUR62016322-RA 59 NYYNCYAKEVGFRVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRIRLVDSRRWRILEATLEHNHLL 142 69***************************************9988.....99*******************************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MEEESGNIGI VQDDVVSITL QSEGNREELD FYNIVADGRK EFVAPAVGME FESYDDAYNY 60 YNCYAKEVGF RVRVKNSWFK RNSKEKYGAV LCCSSQGFKR IKDVNRLRKE TRTGCPAMIR 120 IRLVDSRRWR ILEATLEHNH LLGPRMYKTI KTVEADSKRK SLFNSNAEGQ TIKLYKAVVI 180 DSSDTGCLNT SAKETPSFSN HHNQLHLKKG DAQAIYNYLC HRSQTLQSAI SEVFPRSLHR 240 YGISLIMRKI PEKLGGLRNY DAIRKTFAKA VYETLKVGEF EAAWGQMVQQ HGIANHEWLR 300 SLYEDRVRWA PVYLKDTFFA GMSTARPADI LHPFFEKYVH KQTPLKEFFD KYELALHKKH 360 KEETLSDIES RSSSSLLKTK CSFEQQLSKI YTKEIFQKFQ LEVEEMYSCF STTQLHVDGP 420 YIIFLVKERL LGEGNRREIR DYEVYYNRGS AEVRCICSCF NFNGYLCRHA LCVLNFNGVE 480 EIPAKYILSR WKKEYKRLYV IDHANNTIDI NDRIQRFNQL YRSALRVVEE GVISIDHYSS 540 ASQAFEESLN RVHNVEEKQE *

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MEEESGNIGI VQDDVVSITL QSEGNREELD FYNIVADGRK EFVAPAVGME FESYDDAYNY  60
YNCYAKEVGF RVRVKNSWFK RNSKEKYGAV LCCSSQGFKR IKDVNRLRKE TRTGCPAMIR  120
IRLVDSRRWR ILEATLEHNH LLGPRMYKTI KTVEADSKRK SLFNSNAEGQ TIKLYKAVVI  180
DSSDTGCLNT SAKETPSFSN HHNQLHLKKG DAQAIYNYLC HRSQTLQSAI SEVFPRSLHR  240
YGISLIMRKI PEKLGGLRNY DAIRKTFAKA VYETLKVGEF EAAWGQMVQQ HGIANHEWLR  300
SLYEDRVRWA PVYLKDTFFA GMSTARPADI LHPFFEKYVH KQTPLKEFFD KYELALHKKH  360
KEETLSDIES RSSSSLLKTK CSFEQQLSKI YTKEIFQKFQ LEVEEMYSCF STTQLHVDGP  420
YIIFLVKERL LGEGNRREIR DYEVYYNRGS AEVRCICSCF NFNGYLCRHA LCVLNFNGVE  480
EIPAKYILSR WKKEYKRLYV IDHANNTIDI NDRIQRFNQL YRSALRVVEE GVISIDHYSS  540
ASQAFEESLN RVHNVEEKQE *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-169	FAR1 family protein