PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62015495-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C2H2
Protein Properties Length: 259aa    MW: 28664.1 Da    PI: 10.0796
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62015495-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000266284123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+ +Fs++  L  H++ H
  AUR62015495-RA 62 FTCKYCPGRFSTSQALGGHQNAH 84
                    89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MDVKSSSSSL ETPYNSSSKN TMLDLKLSSF SQDLSTQQAN GDVIKELSSD HQKRIKPRIR  60
DFTCKYCPGR FSTSQALGGH QNAHKQERAR DKMRQATGFS PYSSTNNLYQ PYFGMYNNIS  120
YGGYFKRSPL GVVKTNSMIH KPGSGYRMPM YQGYRHGYGS TNQPKTLLLG NSQISSYDNL  180
SMSNNNVKNN YSPFNNLNNL SKSLPTLVEG GSAQVLRGIG ENVIVESDNS KKGELRIDGG  240
KLDQVKPEKS GLDLSLRL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-11C2H2 family protein