PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62015062-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family GRAS
Protein Properties Length: 539aa    MW: 60085.4 Da    PI: 6.3234
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62015062-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.34.1e-1361675362374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++L++cA+av ++d+  aq+l+ +l++++s +g+p+qRl ay++e+L ar a+s+s++y+al+++e +   s++ l++l++++ev+P++kf+++
  AUR62015062-RA 167 KQVLVACARAVVENDQLVAQWLMDELRQMVSVSGSPIQRLGAYMLEGLVARQASSGSSIYEALKSKEPA---SADLLSYLHILFEVCPYIKFGYM 258
                     689*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI ea+++e+rvHiiDf+i+qG+QW++Llqa+a+Rp+g+p++R+Tg++++ s   +   l+ +g+rL+++A++++vpfef++ v  +   +
  AUR62015062-RA 259 SANGAIAEAMKNERRVHIIDFQIGQGTQWVTLLQAFAARPGGAPHIRVTGIDDSYSAyaRGGGLNIVGQRLSRLAQAFKVPFEFHA-VDISGCRV 352
                     *****************************************************877788999************************.5668999* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +l++L +++gEalaVn++++lh+++desvs+e++rd++L+lvk+l+Pkvv++veqe+++n++ Fl rf+e+l+yy+a+f+s++++lpr +++ri+
  AUR62015062-RA 353 QLKDLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLNPKVVTLVEQECNTNTAAFLPRFIETLDYYMAMFESMDVTLPRVHKDRIN 447
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vE+++l+r++vn++acegaer+erhe l+kWr+r+++aGFkp+pls  +++++k+ll+++ ++ yr+ee++g+l+lgW++r Lv+ +aW+
  AUR62015062-RA 448 VEQHCLARDVVNLIACEGAERVERHELLGKWRSRFTMAGFKPYPLSVLVNSTIKTLLKNYCDR-YRLEERDGALYLGWMNRDLVASCAWQ 536
                     *************************************************************66.*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    
MSNSLYYQPK REVDTHFMLQ CQPLNPQLYS NLNTESYATS KTSPGQYNTL ESSSGIGSYM  60
MLSSASTLTF ASSGSPGSLL DSSSYPPDQH YSPDYANNSP VSNSCVTDDC SDLKWKLREL  120
ENVMLGPDTT DITDGYSNMI KDGSHVTPLE MDSWGKVIEM LACKDVKQVL VACARAVVEN  180
DQLVAQWLMD ELRQMVSVSG SPIQRLGAYM LEGLVARQAS SGSSIYEALK SKEPASADLL  240
SYLHILFEVC PYIKFGYMSA NGAIAEAMKN ERRVHIIDFQ IGQGTQWVTL LQAFAARPGG  300
APHIRVTGID DSYSAYARGG GLNIVGQRLS RLAQAFKVPF EFHAVDISGC RVQLKDLGIR  360
RGEALAVNFA FMLHHMPDES VSTENHRDRL LRLVKGLNPK VVTLVEQECN TNTAAFLPRF  420
IETLDYYMAM FESMDVTLPR VHKDRINVEQ HCLARDVVNL IACEGAERVE RHELLGKWRS  480
RFTMAGFKPY PLSVLVNSTI KTLLKNYCDR YRLEERDGAL YLGWMNRDLV ASCAWQCS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein