PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62014884-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

ARF

Protein Properties

Length: 589aa MW: 65092.6 Da PI: 8.041

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62014884-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77	2.1e-24	70	171	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + + AUR62014884-RA 70 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGAD 161 99**************************963.3445679********************************************..3489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ AUR62014884-RA 162 GELRLGIRRA 171 999**996 PP
2	Auxin_resp	115	6.9e-38	197	277	2	82
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+s++ vF+v+YnPras+seFvv++++++k+l++++ vGmRfkm+fe ed+ err++G+v+g+ +ldp+rW++SkWr+L AUR62014884-RA 197 FDAISSGRVFNVCYNPRASSSEFVVPLRRFLKSLDTSFNVGMRFKMRFEAEDAGERRYTGVVTGMAELDPMRWSGSKWRCL 277 6799****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence
HQNNIPPHVF CRVLDVKLHA EVATDEVYAQ VSLIPESSQF EEKLKESETD VEGDEEDFED 60 IVKSTTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YKQQRPSQEL VAKDLHGLEW 120 RFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRGA DGELRLGIRR AVQLKGPTSF 180 SALPTRLMSN NSVSAAFDAI SSGRVFNVCY NPRASSSEFV VPLRRFLKSL DTSFNVGMRF 240 KMRFEAEDAG ERRYTGVVTG MAELDPMRWS GSKWRCLMVR WDDVEVNRHG RVSPWEIEPT 300 GSFPSPSSLM ASGLKRSRIG LPLAKPEFPI PSGVGMPDFG ESMGFRKVLQ GQEKLGSRSA 360 CDGNDNPHLS SSDPGRCYPS SIPPGDFGRT AKGIGFRESF RFQKVLQGQE IRHLSPAQVD 420 GLTSSANRGH EGGGPLEIYE GVQVPNCGNG WLKAQVSSPS SVLMFPHPSI QQARSFRSPM 480 CQPRVMSMEH MNYAGVPAYN SLSKASEELV PAGKASCRLF GFSLTEGEHR VDKERSHNSS 540 FPPPETSFWP LVEGQPCYKS PSVTKVGSNC PGANDLYAVR DMLLDIAL*

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence

HQNNIPPHVF CRVLDVKLHA EVATDEVYAQ VSLIPESSQF EEKLKESETD VEGDEEDFED  60
IVKSTTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YKQQRPSQEL VAKDLHGLEW  120
RFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRGA DGELRLGIRR AVQLKGPTSF  180
SALPTRLMSN NSVSAAFDAI SSGRVFNVCY NPRASSSEFV VPLRRFLKSL DTSFNVGMRF  240
KMRFEAEDAG ERRYTGVVTG MAELDPMRWS GSKWRCLMVR WDDVEVNRHG RVSPWEIEPT  300
GSFPSPSSLM ASGLKRSRIG LPLAKPEFPI PSGVGMPDFG ESMGFRKVLQ GQEKLGSRSA  360
CDGNDNPHLS SSDPGRCYPS SIPPGDFGRT AKGIGFRESF RFQKVLQGQE IRHLSPAQVD  420
GLTSSANRGH EGGGPLEIYE GVQVPNCGNG WLKAQVSSPS SVLMFPHPSI QQARSFRSPM  480
CQPRVMSMEH MNYAGVPAYN SLSKASEELV PAGKASCRLF GFSLTEGEHR VDKERSHNSS  540
FPPPETSFWP LVEGQPCYKS PSVTKVGSNC PGANDLYAVR DMLLDIAL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-173	ARF family protein