PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62014696-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 421aa MW: 48425 Da PI: 10.2243

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62014696-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.1	5.1e-17	66	153	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 Yn+YA + GF +rk+k++ ++++ +i +r vCs g+++e+k +e + ++ + rtgCka+++ e +g ++v k +HnH+ AUR62014696-RA 66 LYNNYAFKHGFGTRKAKKNFREDKATIRQRFCVCSYAGFKKERKPGDEPKVYQKRNFRTGCKAMIQFDVELdSGLFVVVKHLMDHNHS 153 7**************9999888888888889*********9***************9999889************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MEGNLRKEHF VMSISLLKGK SQDSSTARVK QVDGESERGE RRGFTEAKKS KLYLKKVKSD 60 DEAYELYNNY AFKHGFGTRK AKKNFREDKA TIRQRFCVCS YAGFKKERKP GDEPKVYQKR 120 NFRTGCKAMI QFDVELDSGL FVVVKHLMDH NHSRVPVSKR HLIRSHRKIS QEQFGMLNSL 180 TENGIRVADA VRVLKNQAGG EKNLGFLCSD AYDALASEKR KKFDGCDTKQ LLSYFKERKS 240 NEYDFYYDFD VDDKAESGVT PSNVWRLHII RTFIRLADRA QIDLKSRTVI EEAIDEYTNK 300 IDILLRKDES ENQESSNTDC RSTVTQDQGD GNLLEPQGVN EECVPQTEDV NGKQKAVVQV 360 EIKDPIKRRK NGQRNTRPKS TQEKITNKLK GQKIKSWKRK TTRGVSKLKQ KAQTTIKVQI 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MEGNLRKEHF VMSISLLKGK SQDSSTARVK QVDGESERGE RRGFTEAKKS KLYLKKVKSD  60
DEAYELYNNY AFKHGFGTRK AKKNFREDKA TIRQRFCVCS YAGFKKERKP GDEPKVYQKR  120
NFRTGCKAMI QFDVELDSGL FVVVKHLMDH NHSRVPVSKR HLIRSHRKIS QEQFGMLNSL  180
TENGIRVADA VRVLKNQAGG EKNLGFLCSD AYDALASEKR KKFDGCDTKQ LLSYFKERKS  240
NEYDFYYDFD VDDKAESGVT PSNVWRLHII RTFIRLADRA QIDLKSRTVI EEAIDEYTNK  300
IDILLRKDES ENQESSNTDC RSTVTQDQGD GNLLEPQGVN EECVPQTEDV NGKQKAVVQV  360
EIKDPIKRRK NGQRNTRPKS TQEKITNKLK GQKIKSWKRK TTRGVSKLKQ KAQTTIKVQI  420
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	367	395	KRRKNGQRNTRPKSTQEKITNKLKGQKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-14	FAR1 family protein