PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62014678-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 370aa MW: 41286 Da PI: 9.3487

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62014678-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.6	5.8e-20	196	293	2	90
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 Y+++A +GF vr s+++ + +n++i+ ++fvCskeg+r + k + ++k+ ++ ++trtgCka ++ kk+k+g +e+++ +HnH AUR62014678-RA 196 IYKKHAFAMGFGVRLSSTRWTqGDNKQIKGKDFVCSKEGFRCKPKVQksppapneNRKKVKQVPTTRTGCKALIRAKKNKEGLFEIEEHIMNHNH 290 7***********9998876478899**********9888778999888888999******************************* PP FAR1 88 ela 90 el+ AUR62014678-RA 291 ELT 293 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MRKNLSENMM TSLYSGDKQK KGNCFECSKG SINDRDNKRL LVIINVLGSA GPLRFLVNEE 60 DVVDGVIATA LKLYAKEGRL PILGSDSTKF LLYCSHAGSD ALGTWDEIGS CGGRNFVLCK 120 KPEQPSNMSE ARSQMISQKR EPSAKTAEQT QSTLTEESTN DNNLSQHSQD HKEEDFNYTG 180 CLIGVTAKTL DEIGDIYKKH AFAMGFGVRL SSTRWTQGDN KQIKGKDFVC SKEGFRCKPK 240 VQKSPPAPNE NRKKVKQVPT TRTGCKALIR AKKNKEGLFE IEEHIMNHNH ELTRKAWQHL 300 HRSERKITEE KAKVIDLMAE SGLKPTEANN LMTNEAGGVE LLGHTLKDHL NYISRRKMKE 360 IEGISSLKA*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MRKNLSENMM TSLYSGDKQK KGNCFECSKG SINDRDNKRL LVIINVLGSA GPLRFLVNEE  60
DVVDGVIATA LKLYAKEGRL PILGSDSTKF LLYCSHAGSD ALGTWDEIGS CGGRNFVLCK  120
KPEQPSNMSE ARSQMISQKR EPSAKTAEQT QSTLTEESTN DNNLSQHSQD HKEEDFNYTG  180
CLIGVTAKTL DEIGDIYKKH AFAMGFGVRL SSTRWTQGDN KQIKGKDFVC SKEGFRCKPK  240
VQKSPPAPNE NRKKVKQVPT TRTGCKALIR AKKNKEGLFE IEEHIMNHNH ELTRKAWQHL  300
HRSERKITEE KAKVIDLMAE SGLKPTEANN LMTNEAGGVE LLGHTLKDHL NYISRRKMKE  360
IEGISSLKA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-12	FAR1 family protein