PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62014620-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

GeBP

Protein Properties

Length: 410aa MW: 44880.4 Da PI: 6.6272

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62014620-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	103.9	1.3e-32	173	262	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 klfqr++se+Dei++L+G+idfkak+g++p+ +id+fy f+kks++++vsk q+v+K+rrLKkKf + +kk +++++ + ++felskki AUR62014620-RA 173 KLFQRVFSEDDEILILKGMIDFKAKRGADPMIEIDDFYGFIKKSLHVEVSKVQIVDKVRRLKKKFFNAKKK-------KLTNPVEIQCFELSKKI 260 579***************************************************************999.......9************** PP DUF573 96 Wg 97 W+ AUR62014620-RA 261 WE 262 *8 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MARNKAQKPL TEAPPEADSS EESTSNSSIE PEEEENSGSS SDEEQTPSTP QPPPASGKKX 60 XXXXXXXXXX XXXXXXNKRP LSEDDSSSDD EEDEPTLQKI KPISKPGFIS GTLGKDQLKY 120 TIAALPAGQV PEKRSSESAL KSSSKKPRKE KSGSVAAISG GAGGGVPEEG SKKLFQRVFS 180 EDDEILILKG MIDFKAKRGA DPMIEIDDFY GFIKKSLHVE VSKVQIVDKV RRLKKKFFNA 240 KKKKLTNPVE IQCFELSKKI WENNYSNAGD DVVVEDDKGT NGAVAENNGN SNVGLKSKAR 300 VLKIKSGSNA GAVGXXXXXX XXXXXXLIEK SGKVVGTDEK DLELEVGEAV AWEELRKKGL 360 RMMGAKARAE IGEMWEKVAM KQAEARILRS EAEQEETRRI MEALRSGKH*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MARNKAQKPL TEAPPEADSS EESTSNSSIE PEEEENSGSS SDEEQTPSTP QPPPASGKKX  60
XXXXXXXXXX XXXXXXNKRP LSEDDSSSDD EEDEPTLQKI KPISKPGFIS GTLGKDQLKY  120
TIAALPAGQV PEKRSSESAL KSSSKKPRKE KSGSVAAISG GAGGGVPEEG SKKLFQRVFS  180
EDDEILILKG MIDFKAKRGA DPMIEIDDFY GFIKKSLHVE VSKVQIVDKV RRLKKKFFNA  240
KKKKLTNPVE IQCFELSKKI WENNYSNAGD DVVVEDDKGT NGAVAENNGN SNVGLKSKAR  300
VLKIKSGSNA GAVGXXXXXX XXXXXXLIEK SGKVVGTDEK DLELEVGEAV AWEELRKKGL  360
RMMGAKARAE IGEMWEKVAM KQAEARILRS EAEQEETRRI MEALRSGKH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	231	244	RRLKKKFFNAKKKK
2	231	245	RRLKKKFFNAKKKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	2e-18	GeBP family protein