PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62014263-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 1276aa MW: 142774 Da PI: 8.4301

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62014263-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0013	1243	1269	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg +F+ s++ rH r+ H AUR62014263-RA 1243 YQCKieECGLTFRFVSDFSRHRRKfgH 1269 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1276 aa Download sequence
MGNVVLPKWL KELPLAPEFR PTDTEFADPI AYISKIEKEV GPFGICKVIP PLPKPSKRYV 60 FDKLNKTLLR TRELGLDVNL KETGDLSKRV NQDKRHEVKN RAVFTTRQQE LGKEAKRSKG 120 GVDVSQLAAQ KQVWQSGELY TLEQFESKSK AFSRSVLGSV KEVTPLTIEA LFWKAASEKP 180 IYIEYANDVP GSGFGEPEGF SGYFRACNKR KRMCGPSPGG RSYLRQQSVN KEASLCAGVE 240 GEDLVPSSSP LEALEKERID LEASSPDDIP QFTKQRDLRA DAELEGTAGW KLSNCPWNLQ 300 VIARSAGSLT RFMLDDIPGV TSPMVYIGML FSWFAWHVED HELHSLNFLH TGSPKTWYAI 360 PGEHAFAFED VIRKQAYGGD MDHLAALKIL GEKTTLLSPE MVVASGIPCC RLVQNPGEFV 420 VTFPRAYHLG FSHGFNCGEA ANFGTPQWLT IAKEAAVRRA VMDHLPMLSH QQLLYLLTMS 480 FVLRVPRTLL PGARSSRLRN HLKEERELLV KKAFIEDVLK ENHLLNTLLG KESAFRAVLW 540 HPDSLPSLAR YSQAGTIMDA APIKGVDMSV QPYKSVNEDN LQLTSHRKTP NALCLDSNDI 600 LCDFQVDSGT LVCVACGILG YPIMSVVQPS KMASMENLSA VKMNVSGVVD ISRPSDSRHI 660 QCSTKIYSPE TNDDETWDTS GFLRPRIFCL EHAVKIEELL RPKGGAKMLV ICHSDYQKYK 720 ANAAAVAEEL RTSFNYKEVR FDSVSQEELN LIDIAIDEKL NDSQEDWTSK LGINLRFSVK 780 TRKDSLPKKI EHALNIDYLL SIMAPDSRIS YIKWCSRKSR TKQKSNCRTL ATNCNGNLSK 840 KDEIIHVTSS MESKRKVLLQ YSRRKYRTTS RTFTGANNAS DADRGKVNDH NEDIPGTSCS 900 KSLEKRFVVC EEVEAPALNR DPVINEAFTS ASCESNVLRI SGETDNLNEH MDAESCPSLI 960 GSAMPDAGIS SSARKGAGGE YGCMAKIIDL AMLCIPEELN DDQITVNSVP DNSCNTLEVY 1020 ANAANNAGES EPCKHDTTTV EVDMHILPKD NLTGSSQTGE CASSLLSMQE KQEIKLATAK 1080 MTSRDGSKRR RKVELQTEAH KNFIKSPCEG LRPRKNRNGL VHTLDSNVAE LTKEKPLTKK 1140 LKKSSGRASC NQVLDDKTSY RCSREGCRML FRTKVDLSSH KNNKCHHRGC GKKFRSHKSV 1200 VLHQRVHDDE RPLKCSWTGC TMTFKWAWAR TEHMRLHTGE RPYQCKIEEC GLTFRFVSDF 1260 SRHRRKFGHY VTPAS*

Sequence ? help Back to Top

Protein Sequence Length: 1276 aa Download sequence

MGNVVLPKWL KELPLAPEFR PTDTEFADPI AYISKIEKEV GPFGICKVIP PLPKPSKRYV  60
FDKLNKTLLR TRELGLDVNL KETGDLSKRV NQDKRHEVKN RAVFTTRQQE LGKEAKRSKG  120
GVDVSQLAAQ KQVWQSGELY TLEQFESKSK AFSRSVLGSV KEVTPLTIEA LFWKAASEKP  180
IYIEYANDVP GSGFGEPEGF SGYFRACNKR KRMCGPSPGG RSYLRQQSVN KEASLCAGVE  240
GEDLVPSSSP LEALEKERID LEASSPDDIP QFTKQRDLRA DAELEGTAGW KLSNCPWNLQ  300
VIARSAGSLT RFMLDDIPGV TSPMVYIGML FSWFAWHVED HELHSLNFLH TGSPKTWYAI  360
PGEHAFAFED VIRKQAYGGD MDHLAALKIL GEKTTLLSPE MVVASGIPCC RLVQNPGEFV  420
VTFPRAYHLG FSHGFNCGEA ANFGTPQWLT IAKEAAVRRA VMDHLPMLSH QQLLYLLTMS  480
FVLRVPRTLL PGARSSRLRN HLKEERELLV KKAFIEDVLK ENHLLNTLLG KESAFRAVLW  540
HPDSLPSLAR YSQAGTIMDA APIKGVDMSV QPYKSVNEDN LQLTSHRKTP NALCLDSNDI  600
LCDFQVDSGT LVCVACGILG YPIMSVVQPS KMASMENLSA VKMNVSGVVD ISRPSDSRHI  660
QCSTKIYSPE TNDDETWDTS GFLRPRIFCL EHAVKIEELL RPKGGAKMLV ICHSDYQKYK  720
ANAAAVAEEL RTSFNYKEVR FDSVSQEELN LIDIAIDEKL NDSQEDWTSK LGINLRFSVK  780
TRKDSLPKKI EHALNIDYLL SIMAPDSRIS YIKWCSRKSR TKQKSNCRTL ATNCNGNLSK  840
KDEIIHVTSS MESKRKVLLQ YSRRKYRTTS RTFTGANNAS DADRGKVNDH NEDIPGTSCS  900
KSLEKRFVVC EEVEAPALNR DPVINEAFTS ASCESNVLRI SGETDNLNEH MDAESCPSLI  960
GSAMPDAGIS SSARKGAGGE YGCMAKIIDL AMLCIPEELN DDQITVNSVP DNSCNTLEVY  1020
ANAANNAGES EPCKHDTTTV EVDMHILPKD NLTGSSQTGE CASSLLSMQE KQEIKLATAK  1080
MTSRDGSKRR RKVELQTEAH KNFIKSPCEG LRPRKNRNGL VHTLDSNVAE LTKEKPLTKK  1140
LKKSSGRASC NQVLDDKTSY RCSREGCRML FRTKVDLSSH KNNKCHHRGC GKKFRSHKSV  1200
VLHQRVHDDE RPLKCSWTGC TMTFKWAWAR TEHMRLHTGE RPYQCKIEEC GLTFRFVSDF  1260
SRHRRKFGHY VTPAS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein