PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62014049-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 442aa MW: 48967.7 Da PI: 6.0705

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62014049-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.8	9.2e-14	282	324	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er+RR+riN+++ Lr l+Pk +K+ Ka++L A++YI +L AUR62014049-RA 282 LTERNRRQRINDGILSLRALVPKI-----TKMHKAATLSDAIDYIEEL 324 67*******************7.....7*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MCHLETALEW LRPLVFDSGI WDYCVLWKLG DDPSRFIEFL GCCCNGGGRQ EMGLRKRKRE 60 KNNSMQFCKD VNYVHLANTN SCQVLANLPP FMSIYSGLHG EVVLSCQPRW LTSKKSDLKM 120 STEESCGTHV LIPMFGGLVE LYSSKHVEED ESVIEYVKSQ FNIYSELETM STSTISFDGQ 180 FIDPFLDIKS NSGLSSLNQP NIPAWPQPSM LPSVAQRYSN STLDGSSTGS FPSDERPSPD 240 SNPCSVSQDI PSKPLMVCHK DPAIVQEKHG LERGTGKSKN LLTERNRRQR INDGILSLRA 300 LVPKITKMHK AATLSDAIDY IEELNNEIKE LQDELKSLIE EDSDEKHTLK LKADLGEKVS 360 KPKQASSVAE RIKANVQANQ LGNGSFLLRI ICQQKPGVYT KLLEALSALG LPIKDANLTT 420 CDGQVSTNFT VQVTANSVTE A*

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MCHLETALEW LRPLVFDSGI WDYCVLWKLG DDPSRFIEFL GCCCNGGGRQ EMGLRKRKRE  60
KNNSMQFCKD VNYVHLANTN SCQVLANLPP FMSIYSGLHG EVVLSCQPRW LTSKKSDLKM  120
STEESCGTHV LIPMFGGLVE LYSSKHVEED ESVIEYVKSQ FNIYSELETM STSTISFDGQ  180
FIDPFLDIKS NSGLSSLNQP NIPAWPQPSM LPSVAQRYSN STLDGSSTGS FPSDERPSPD  240
SNPCSVSQDI PSKPLMVCHK DPAIVQEKHG LERGTGKSKN LLTERNRRQR INDGILSLRA  300
LVPKITKMHK AATLSDAIDY IEELNNEIKE LQDELKSLIE EDSDEKHTLK LKADLGEKVS  360
KPKQASSVAE RIKANVQANQ LGNGSFLLRI ICQQKPGVYT KLLEALSALG LPIKDANLTT  420
CDGQVSTNFT VQVTANSVTE A*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	61	RKRKREK
2	55	62	RKRKREKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	1e-63	bHLH family protein