PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62013877-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 713aa MW: 82545.9 Da PI: 6.5195

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62013877-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.9	4e-19	140	242	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 Y+ +A++vGFs+rk++++++ +++ +t++ +vCs egkr++ kk ++++ r+ + trt+Cka+l+ k+++dgk++v + + AUR62013877-RA 140 LYSLHASTVGFSIRKHTTRYRLHTRIVTEKYYVCSAEGKRHTAAKKtnmvlmvdednkdlKQRKPRQVSITRTNCKASLRAKMNDDGKFKVVSHV 234 7999************************************99999*******98888999999********************** PP FAR1 83 leHnHela 90 l+H+Hel+ AUR62013877-RA 235 LQHTHELT 242 ****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence
MPETSKASNY ENLMREFLQL QRENRPPLTQ HPEKTWSFDL NQTFREGEAE NFVDDFDEFN 60 DDNIQNSKVP EIQIQDIENQ GVSNTLEDED QVIPNTLDEE GQPVDEDEDT NPKPIDTTGL 120 DMEGSLVGVE RDTYQEIYDL YSLHASTVGF SIRKHTTRYR LHTRIVTEKY YVCSAEGKRH 180 TAAKKTNMVL MVDEDNKDLK QRKPRQVSIT RTNCKASLRA KMNDDGKFKV VSHVLQHTHE 240 LTRKQWHYLH RSEREVTIEK AEAIKTMKSA GLSTMDTYNY ICTEANGEEN LGHSVVDHLN 300 FCSRLRMEQI EAGDAQTLVN ILIEEQKEDP NFYFRVKFDK EGRISNIFWR DAMMLEDYKI 360 YRDVLVFDTT YRANRYNLIC APFVGIDNHW KNCMFACAFI GNEKTESFVW LLETFKKSME 420 NRIPTSIFTD QDQAMATAIE QVLPDTRHRL CIWHLEQNAI TRFGALKRDN EFKKIFNKCL 480 KGCVTETEFE ERWKEMIQKF DLVNHAWYQR VYNLKEKWCP PFSKDFFSAG ILSSQRSEST 540 NHAVGFRANK STTLTKFYRI LVRNIKRWRS DEKYNEFTCS KSIAFTSLPL SGMLKHVAQS 600 QENEKARAFM EENFKNCMKM VEDLLAAEAF TEEVAASDDN SNVAESAQST NNTSSSSTST 660 TIPTILDPKR VVTKGRSKRV KGALEKGKKS KQKALPDPNS EFGSKTPTVR LF*

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence

MPETSKASNY ENLMREFLQL QRENRPPLTQ HPEKTWSFDL NQTFREGEAE NFVDDFDEFN  60
DDNIQNSKVP EIQIQDIENQ GVSNTLEDED QVIPNTLDEE GQPVDEDEDT NPKPIDTTGL  120
DMEGSLVGVE RDTYQEIYDL YSLHASTVGF SIRKHTTRYR LHTRIVTEKY YVCSAEGKRH  180
TAAKKTNMVL MVDEDNKDLK QRKPRQVSIT RTNCKASLRA KMNDDGKFKV VSHVLQHTHE  240
LTRKQWHYLH RSEREVTIEK AEAIKTMKSA GLSTMDTYNY ICTEANGEEN LGHSVVDHLN  300
FCSRLRMEQI EAGDAQTLVN ILIEEQKEDP NFYFRVKFDK EGRISNIFWR DAMMLEDYKI  360
YRDVLVFDTT YRANRYNLIC APFVGIDNHW KNCMFACAFI GNEKTESFVW LLETFKKSME  420
NRIPTSIFTD QDQAMATAIE QVLPDTRHRL CIWHLEQNAI TRFGALKRDN EFKKIFNKCL  480
KGCVTETEFE ERWKEMIQKF DLVNHAWYQR VYNLKEKWCP PFSKDFFSAG ILSSQRSEST  540
NHAVGFRANK STTLTKFYRI LVRNIKRWRS DEKYNEFTCS KSIAFTSLPL SGMLKHVAQS  600
QENEKARAFM EENFKNCMKM VEDLLAAEAF TEEVAASDDN SNVAESAQST NNTSSSSTST  660
TIPTILDPKR VVTKGRSKRV KGALEKGKKS KQKALPDPNS EFGSKTPTVR LF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-76	FAR1 family protein