PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62013707-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family SBP
Protein Properties Length: 190aa    MW: 21300.9 Da    PI: 10.8159
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62013707-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.41.6e-4152128278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+++
  AUR62013707-RA  52 CQAEGCNADLSHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSNN 128
                     **************************************************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MQIPKTEPDL FTNRPIGLNL GRRTYFSADD DLVSRLYRRS RAVEPALHSP KCQAEGCNAD  60
LSHAKHYHRR HKVCEFHSKA STVIAAGLTQ RFCQQCSRFH LLSEFDNGKR SCRKRLADHN  120
RRRRKSNNQR ITSTAPSMSS GENAQSSPSQ TILRSPSDSG MNSSSSVTIA VSPPRVSFDS  180
SFMQVRSFE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-70SBP family protein