PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62013625-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 771aa MW: 86280.8 Da PI: 7.0683

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62013625-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91	1.5e-28	30	118	13	100
DUF260 13 akdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +++Cv+apyf +eq +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA r+rdPvyG+v++i++lqqq+ +++aela ++++ AUR62013625-RA 30 VAGCVFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPAHRRLDAVVTLCYEALSRVRDPVYGCVAHIFTLQQQVLNMQAELAFVQAR 118 679*******9989******************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence
MDSWFRGMGE WRGRGREGGG WRVGKGRGVV AGCVFAPYFD SEQGTAHFAA VHKVFGASNA 60 SKLLLRIPAH RRLDAVVTLC YEALSRVRDP VYGCVAHIFT LQQQVLNMQA ELAFVQARLS 120 TLQRLPAAFP AVDQTPSHCC LDQISASSAI ATTTSTRTFV AMFLADLLRL TPTPLPLLEA 180 VFFDLNPSGL DLPFFTRADG GGGGGTSVSS LTEFRRSMLQ LCFFVARDFK VSVLVNFRRT 240 GEKLWKNKNR LATPVEIRSV TPVEVLKSWR SVWKDRNEDT AYLTAWKRIQ DKLNAHIDGN 300 GIRYLCFKNN SNQFVSHISQ WQEIVMSSHS DSDLKHLGLR ETVDKIKQLW TVGAKFYGIP 360 ESFIRVCIAS CNVCAGVSDG GGGGGGGFSG GRPKRRRFEY TESFDVPAKE VPNKLQQLAK 420 KHKVVLCIRQ KYIRYKPFMA EVKDYACHRA GEPASSKKNS KVLKREPYAS KRCGCGFRIR 480 AIVPITNYNE KDKTFVYQEE GMAVFKLYAV HTGHEPGPLD GNARIMHRVV GHKGVFLNDQ 540 ETEYGVNEEL DNDSFMGRDE SDFGHAVLQQ AQELKSEVGL LESRILKLPQ ELLDSVSQEL 600 YHIVNKVRAL GFETSKSVGL DSDKHNSDVM LVGEGDLPHW SDPHDDRLYG DGKDTDLIEE 660 DEDCFGRTLG DVVRWEPMRT DCRSDKDLIS ESCKPDKWLD TSEFDEKSIL SCNSKLTKPM 720 RHDSLDEDVG LVGLQVDSFY PENPKWYDSP CGLDSSTDCG DSEFRHGEIM *

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence

MDSWFRGMGE WRGRGREGGG WRVGKGRGVV AGCVFAPYFD SEQGTAHFAA VHKVFGASNA  60
SKLLLRIPAH RRLDAVVTLC YEALSRVRDP VYGCVAHIFT LQQQVLNMQA ELAFVQARLS  120
TLQRLPAAFP AVDQTPSHCC LDQISASSAI ATTTSTRTFV AMFLADLLRL TPTPLPLLEA  180
VFFDLNPSGL DLPFFTRADG GGGGGTSVSS LTEFRRSMLQ LCFFVARDFK VSVLVNFRRT  240
GEKLWKNKNR LATPVEIRSV TPVEVLKSWR SVWKDRNEDT AYLTAWKRIQ DKLNAHIDGN  300
GIRYLCFKNN SNQFVSHISQ WQEIVMSSHS DSDLKHLGLR ETVDKIKQLW TVGAKFYGIP  360
ESFIRVCIAS CNVCAGVSDG GGGGGGGFSG GRPKRRRFEY TESFDVPAKE VPNKLQQLAK  420
KHKVVLCIRQ KYIRYKPFMA EVKDYACHRA GEPASSKKNS KVLKREPYAS KRCGCGFRIR  480
AIVPITNYNE KDKTFVYQEE GMAVFKLYAV HTGHEPGPLD GNARIMHRVV GHKGVFLNDQ  540
ETEYGVNEEL DNDSFMGRDE SDFGHAVLQQ AQELKSEVGL LESRILKLPQ ELLDSVSQEL  600
YHIVNKVRAL GFETSKSVGL DSDKHNSDVM LVGEGDLPHW SDPHDDRLYG DGKDTDLIEE  660
DEDCFGRTLG DVVRWEPMRT DCRSDKDLIS ESCKPDKWLD TSEFDEKSIL SCNSKLTKPM  720
RHDSLDEDVG LVGLQVDSFY PENPKWYDSP CGLDSSTDCG DSEFRHGEIM *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	394	423	KRRRFEYTESFDVPAKEVPNKLQQLAKKHK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45410.1	5e-50	LBD family protein