PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62012823-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family GRAS
Protein Properties Length: 545aa    MW: 61110.9 Da    PI: 6.5063
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62012823-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.92.2e-1281745441374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L+ cA+avs++d + a++l+  l +++s  g+pmqRlaay++e+L+arl +s+ ++yk+l++++ +   sse l++++++++v+P++kf++
  AUR62012823-RA 174 LKQVLYLCAQAVSEKDVSTAETLMDALGKMVSVCGTPMQRLAAYMLEGLRARLESSGYTIYKKLRCEQPT---SSELLTYMHILYQVCPYFKFAY 265
                     5799*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +  N  I eav +e+ +HiiDf+i++G+QW++L+q+L +Rp+gpp +RiTgv++++s   +   le +++rL   A++++vpfef++ +a +  +
  AUR62012823-RA 266 MSSNLIIQEAVGHERSIHIIDFQIGMGTQWISLIQSLGNRPGGPPLVRITGVDDSQSAyaRGAGLELVEKRLLMEAKKCNVPFEFHA-AAMSGCQ 359
                     ******************************************************999899999************************.89999** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ e+L+++pgEal Vn+ ++lh+++desvs++++rd++L+lvk+lsP++v+vveqe+++n+++Fl+rf+e+l+yy+a+++s+++ l+r++++ri
  AUR62012823-RA 360 VKRENLSIRPGEALTVNFPYMLHHMPDESVSTANHRDRLLRLVKELSPRIVTVVEQESNTNTSPFLNRFAETLDYYTAMYESVDVALARDDKKRI 454
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + E ++l+r+ivn++ace aer+erhe ++kWr+rl++aGF+++pls+++ + ++ ll++++++ yr++e +g+l+lgWk+r L s SaWr
  AUR62012823-RA 455 NAEMHCLARDIVNMIACEDAERVERHEPFGKWRARLSMAGFTQLPLSYTVIDGVRGLLKEFHGN-YRLQEWHGALFLGWKNRILSSSSAWR 544
                     **************************************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    
MQTSQHNCAT SGVHGFLYQH APDITPYCSS HYQVFDNNMY PNNPTQGNQI SFQNFNEEYI  60
TLDSGQNAGL YNIYDSPSGV STSSNRSQFS PQGSQSYISD PPQSSDNTYG SPMSNSSVVD  120
DNTELRNQLR ELERSLMGPD SPRSADGHYC SLSHGGNHGS SSNQLMEMLP KMDLKQVLYL  180
CAQAVSEKDV STAETLMDAL GKMVSVCGTP MQRLAAYMLE GLRARLESSG YTIYKKLRCE  240
QPTSSELLTY MHILYQVCPY FKFAYMSSNL IIQEAVGHER SIHIIDFQIG MGTQWISLIQ  300
SLGNRPGGPP LVRITGVDDS QSAYARGAGL ELVEKRLLME AKKCNVPFEF HAAAMSGCQV  360
KRENLSIRPG EALTVNFPYM LHHMPDESVS TANHRDRLLR LVKELSPRIV TVVEQESNTN  420
TSPFLNRFAE TLDYYTAMYE SVDVALARDD KKRINAEMHC LARDIVNMIA CEDAERVERH  480
EPFGKWRARL SMAGFTQLPL SYTVIDGVRG LLKEFHGNYR LQEWHGALFL GWKNRILSSS  540
SAWR*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein