PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62012460-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C2H2
Protein Properties Length: 285aa    MW: 31033.2 Da    PI: 6.5675
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62012460-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023110132123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  AUR62012460-RA 110 FSCNYCQRKFYSSQALGGHQNAH 132
                     89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MEQAELEPCL SGTSSTISAS QEALPQERLY RSLHQQHKAS KGAQQLEDQD AEQETVSQTQ  60
IPLDLMLSNE DSCNEFNAEL NLIDCINVGS SQSSSESPPQ GSENCEPRVF SCNYCQRKFY  120
SSQALGGHQN AHKRERTIAK RNQRIGATIA ATAAAFGYPY LHQHHNYSNI ASLPLHGSPN  180
RSLGIQVHSM IHKTPNNNMT MSSSGNVYGH HGWLRLPIEQ QPAVGKLVSE TYHGSVTAGP  240
SSRGGPGRFN IVDEGVTSGG WWTGDTQIKS NSEESTKLDL SLKL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.15e-48C2H2 family protein