PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62012272-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB_related

Protein Properties

Length: 397aa MW: 44130.7 Da PI: 9.034

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62012272-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30	9.2e-10	61	87	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h ++E+rRRdriN +++Lr+l+Pk+ AUR62012272-RA 61 SHRQAEKRRRDRINGQLARLRRLVPKS 87 89***********************95 PP
2	Myb_DNA-binding	40.7	5.3e-13	225	256	14	47
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqky 47 +a+k +G++ W+tIa+ ++ gRt++ +k++w++ AUR62012272-RA 225 EAHKAHGNR-WATIAKLLP-GRTDNAIKNHWNST 256 89*****.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MAQNSFSYPR LPEEETMSHH FHGTTATRSM QFLQELPTNY GFEFEGNAEL EDKTAANSSH 60 SHRQAEKRRR DRINGQLARL RRLVPKSDKA TLCCEDRPDL IPELIRALKD LNLTIIGAEI 120 GCLGGRLKSI LLLYYKLDNN DGVCNVSAIK QSLMGVLTRI ISWSSASTSN FRVTKKSSTN 180 GNTERRRKGS GEGIMDPTRG CNVEKASGST WAEELDFDKR RNSREAHKAH GNRWATIAKL 240 LPGRTDNAIK NHWNSTLRRK RDPQVGAESK RQRVEVAVSS ESESGVIKKE VSSGVVSEQE 300 EDGGVETVLT LLPPGKVMDV PRGGEREGED QVRKGDDEGE IKKLMRCTVG RDDTCLINVM 360 QNMIAAEVKS YIDRLVLQPK SGDENAPKSD SARHSK*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MAQNSFSYPR LPEEETMSHH FHGTTATRSM QFLQELPTNY GFEFEGNAEL EDKTAANSSH  60
SHRQAEKRRR DRINGQLARL RRLVPKSDKA TLCCEDRPDL IPELIRALKD LNLTIIGAEI  120
GCLGGRLKSI LLLYYKLDNN DGVCNVSAIK QSLMGVLTRI ISWSSASTSN FRVTKKSSTN  180
GNTERRRKGS GEGIMDPTRG CNVEKASGST WAEELDFDKR RNSREAHKAH GNRWATIAKL  240
LPGRTDNAIK NHWNSTLRRK RDPQVGAESK RQRVEVAVSS ESESGVIKKE VSSGVVSEQE  300
EDGGVETVLT LLPPGKVMDV PRGGEREGED QVRKGDDEGE IKKLMRCTVG RDDTCLINVM  360
QNMIAAEVKS YIDRLVLQPK SGDENAPKSD SARHSK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-14	MYB family protein