PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62011728-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 985aa MW: 110161 Da PI: 6.0518

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62011728-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.6	2.6e-41	125	202	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+Ceadl++ak+yhrrhkvCe hska+++lv++++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ AUR62011728-RA 125 VCQVEDCEADLTKAKDYHRRHKVCELHSKATKALVANVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQP 202 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 985 aa Download sequence
MMEQAHRLSE LRKRGIEWDL NDWKWDGDLF IATPSNSQGQ QFIPLVPVPG NSSNTSSSCS 60 DDVDDGTGRR DLERKRRVFV VDQDSLEEAA PLTLKLGVPH RERDHWETST AKKTKLPSTS 120 STRAVCQVED CEADLTKAKD YHRRHKVCEL HSKATKALVA NVMQRFCQQC SRFHALQEFD 180 EGKRSCRRRL AGHNKRRRKT QPETAVQGNS MDDQTNSVLL MSLLRILSNM HGNNRANQTT 240 DQDLVAQLLK SLANPSGLHS GKGLSGLLHE SQKLLNGGMA TGNGHSEKMS AYLSNDQQNT 300 PRVIDQHVQL PDSEIPRKGL YPANSRGSEI QAVSLEEPKS LFPIKDSPPA YSETTEGRMK 360 LNNFDLNDAY VDSDDGMEDL ERSPVNENFA TGSVDFPSWA RQDSHQSSPP QTSGNSDSAS 420 AQSPSSSSGE AQSRTDRIVF KLFGKEPNDF PIMLRGQILD WLAHSPTEIE SYIRPGCIIL 480 TIYLRLAESS WEELCSDLSS RLTQLFDISD DTFWRMGWVY VRVQNQIAIV HNGEVVLDTS 540 LSLKDNNCCR ILSVMPIAVS MNEQVQFKVR GFNLSQSTTR LLCALEGKYL DQEVSQESEV 600 GDFLEDDDET DHANLSCIIP KATGRGFIEV EDHGLSSSFF PFIVAEKDVC SEIRTLENVL 660 ELKKTDEEAY EINKTLESWC QAMDFINEMG WLLHRSHLKS RLADLDPNTV IFSFRRFKWL 720 MDFSMDHDWC AVVKKLLDIL FAGTVGLGEH SSLKVALSEM GILHRAVRRN SRPMVEFLLR 780 YAPLNVSEEF ISSNDGGQVR FLFRPDAQGP AGLTPLHVAA GRDGSEDILD ALTDDPGKNG 840 IDAWKNARDS TGATPEDYAR LRGHYAYIHI VQRKIYRSST SGHVVVDIPG EQSVAPRQDG 900 ALSFEVGRSA SLAMNQSCKL CDQKKMSVYY GSRSRASLVY RPAMLSMVGI AAVCVCVALL 960 FKSMPNVVCL FQPFRWEMLN YGSS*

Sequence ? help Back to Top

Protein Sequence Length: 985 aa Download sequence

MMEQAHRLSE LRKRGIEWDL NDWKWDGDLF IATPSNSQGQ QFIPLVPVPG NSSNTSSSCS  60
DDVDDGTGRR DLERKRRVFV VDQDSLEEAA PLTLKLGVPH RERDHWETST AKKTKLPSTS  120
STRAVCQVED CEADLTKAKD YHRRHKVCEL HSKATKALVA NVMQRFCQQC SRFHALQEFD  180
EGKRSCRRRL AGHNKRRRKT QPETAVQGNS MDDQTNSVLL MSLLRILSNM HGNNRANQTT  240
DQDLVAQLLK SLANPSGLHS GKGLSGLLHE SQKLLNGGMA TGNGHSEKMS AYLSNDQQNT  300
PRVIDQHVQL PDSEIPRKGL YPANSRGSEI QAVSLEEPKS LFPIKDSPPA YSETTEGRMK  360
LNNFDLNDAY VDSDDGMEDL ERSPVNENFA TGSVDFPSWA RQDSHQSSPP QTSGNSDSAS  420
AQSPSSSSGE AQSRTDRIVF KLFGKEPNDF PIMLRGQILD WLAHSPTEIE SYIRPGCIIL  480
TIYLRLAESS WEELCSDLSS RLTQLFDISD DTFWRMGWVY VRVQNQIAIV HNGEVVLDTS  540
LSLKDNNCCR ILSVMPIAVS MNEQVQFKVR GFNLSQSTTR LLCALEGKYL DQEVSQESEV  600
GDFLEDDDET DHANLSCIIP KATGRGFIEV EDHGLSSSFF PFIVAEKDVC SEIRTLENVL  660
ELKKTDEEAY EINKTLESWC QAMDFINEMG WLLHRSHLKS RLADLDPNTV IFSFRRFKWL  720
MDFSMDHDWC AVVKKLLDIL FAGTVGLGEH SSLKVALSEM GILHRAVRRN SRPMVEFLLR  780
YAPLNVSEEF ISSNDGGQVR FLFRPDAQGP AGLTPLHVAA GRDGSEDILD ALTDDPGKNG  840
IDAWKNARDS TGATPEDYAR LRGHYAYIHI VQRKIYRSST SGHVVVDIPG EQSVAPRQDG  900
ALSFEVGRSA SLAMNQSCKL CDQKKMSVYY GSRSRASLVY RPAMLSMVGI AAVCVCVALL  960
FKSMPNVVCL FQPFRWEMLN YGSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	115	RKRRVFVVDQDSLEEAAPLTLKLGVPHRERDHWETSTAKKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein