PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62011506-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 648aa MW: 74992.7 Da PI: 8.558

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62011506-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.2	4.8e-22	59	142	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++ +w++ ++ leHnH l AUR62011506-RA 59 NYYNCYAKEVGFRVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSRRWRILEVTLEHNHLL 142 69***************************************9988.....99*******************************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence
MEEDSGTIGL VQDVDVSITL ESEGNRVELD FQNIVADGRK EFVAPAVGME FESYDDAYNY 60 YNCYAKEVGF RVRVKNSWFK RNSKEKYGAV LCCSSQGFKR IKDVNRLRKE TRTGCPAMIR 120 MRLVDSRRWR ILEVTLEHNH LLGPRMYKTI KTVEADSKRK SLFNSNAEGQ TIKLYKAVVI 180 DSSDTGYLKT SAKETQSFSD HHNQLHLKKG DAQAIYNYLC HRSQTLQSAI SEVFPRSLHR 240 YGISLIMRKV PEKLGGLCNY DAIRKAFAKA VYETLKVGEF EAAWGLMVQQ HGIANHEWLR 300 SLYEDRVRWA PVYLKDTFFA GMSTARPADI LHPFFEKYVH KQTPLKEFFD KYELALHKKH 360 KEETLSDIES RSSSSLLKTR CSFEQQLSKV YTKEIFQKFQ LEVEEMYSCF STTQLHVDGP 420 YIIFLVKERL LGEGNRREIR DYEVYYNRGS AEVRCICSCF NFNGYLCRHA LCVLNFNGVE 480 EIPAKYILSR WKKEYKRLYV IDHANNTIDI NDRIQRFNQL YRSALRVVEE GVISLDHYSS 540 ASQAFEESLN RVHNKYILSS SSGSLFQANA SFLHFSRKQA KDLQEMCQGM TLPDIMLIYM 600 HTVALCLQSR QILAVLMDMV SPLNSTECTG DDISMKLKSL RFKENIE*

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence

MEEDSGTIGL VQDVDVSITL ESEGNRVELD FQNIVADGRK EFVAPAVGME FESYDDAYNY  60
YNCYAKEVGF RVRVKNSWFK RNSKEKYGAV LCCSSQGFKR IKDVNRLRKE TRTGCPAMIR  120
MRLVDSRRWR ILEVTLEHNH LLGPRMYKTI KTVEADSKRK SLFNSNAEGQ TIKLYKAVVI  180
DSSDTGYLKT SAKETQSFSD HHNQLHLKKG DAQAIYNYLC HRSQTLQSAI SEVFPRSLHR  240
YGISLIMRKV PEKLGGLCNY DAIRKAFAKA VYETLKVGEF EAAWGLMVQQ HGIANHEWLR  300
SLYEDRVRWA PVYLKDTFFA GMSTARPADI LHPFFEKYVH KQTPLKEFFD KYELALHKKH  360
KEETLSDIES RSSSSLLKTR CSFEQQLSKV YTKEIFQKFQ LEVEEMYSCF STTQLHVDGP  420
YIIFLVKERL LGEGNRREIR DYEVYYNRGS AEVRCICSCF NFNGYLCRHA LCVLNFNGVE  480
EIPAKYILSR WKKEYKRLYV IDHANNTIDI NDRIQRFNQL YRSALRVVEE GVISLDHYSS  540
ASQAFEESLN RVHNKYILSS SSGSLFQANA SFLHFSRKQA KDLQEMCQGM TLPDIMLIYM  600
HTVALCLQSR QILAVLMDMV SPLNSTECTG DDISMKLKSL RFKENIE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-165	FAR1 family protein