PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62011307-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 460aa MW: 50638.3 Da PI: 5.7781

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62011307-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.6	6.2e-10	268	315	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq AUR62011307-RA 268 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 315 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MNRALPEMLH CLNMPANIIG GKGMEMSVLE RQRMVLKWQQ EQLFQVQPTQ QLSCFNDLSM 60 LSFFPPEAQD FQCADMNYCP SSVTTGPTLN ELLNRPIKAD PGAENGWMDF GMQKSGVTVG 120 SMGIETAGEV HNNPGYETNY GISRTASCPP SVAKAAAISL KAARDAKGRE TLLSDQKLSG 180 AVGRESFKKR KAERNPSTPK VVDAEEDNQS KKSKGCAEEE ESKITEQHSN KHSSSSSQGC 240 TSKDSKASEV QKPDYIHVRA RRGQATDSHS LAERVRREKI SERMKYLQDL VPGCNKITGK 300 AGMLDEIINY VQSLQRQVEF LSMKLAAVNP RLDINIDELI AKEVFAACSA SLPTMGVSPD 360 LTNPSYLQYN PVEQMDPICG STVVGNPIDL GLRRSISAPV PVPETFLDTS CFNQIPNSLQ 420 WDAELQNIYN MEFQQGRSTS FPLQTFTGTV ESSSLKMEM*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MNRALPEMLH CLNMPANIIG GKGMEMSVLE RQRMVLKWQQ EQLFQVQPTQ QLSCFNDLSM  60
LSFFPPEAQD FQCADMNYCP SSVTTGPTLN ELLNRPIKAD PGAENGWMDF GMQKSGVTVG  120
SMGIETAGEV HNNPGYETNY GISRTASCPP SVAKAAAISL KAARDAKGRE TLLSDQKLSG  180
AVGRESFKKR KAERNPSTPK VVDAEEDNQS KKSKGCAEEE ESKITEQHSN KHSSSSSQGC  240
TSKDSKASEV QKPDYIHVRA RRGQATDSHS LAERVRREKI SERMKYLQDL VPGCNKITGK  300
AGMLDEIINY VQSLQRQVEF LSMKLAAVNP RLDINIDELI AKEVFAACSA SLPTMGVSPD  360
LTNPSYLQYN PVEQMDPICG STVVGNPIDL GLRRSISAPV PVPETFLDTS CFNQIPNSLQ  420
WDAELQNIYN MEFQQGRSTS FPLQTFTGTV ESSSLKMEM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	214	KKRKAERNPSTPKVVDAEEDNQSKKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	5e-62	bHLH family protein