PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62010821-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

WRKY

Protein Properties

Length: 362aa MW: 40426.9 Da PI: 6.1819

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62010821-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.2	1.5e-27	134	194	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK++ g+++prsYYrCt++ gC ++k+v+r++edp +++tY+g+H+++ AUR62010821-RA 134 EDGYSWRKYGQKDILGAKHPRSYYRCTYRniqGCYATKQVQRDDEDPMQFKVTYKGTHTCT 194 7*************************98999************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MENGCGNYEQ ESLVMELNQG VALAKQLKAQ MSSEILTGET KGMLAERIHS CLEKALLILR 60 LGGSMEQFHQ HLVPSTTAPE SPLSVIGSPK SEDLNPGIHV QQDGREPSRK RKMMPTWTDQ 120 VRACSENAAE GPPEDGYSWR KYGQKDILGA KHPRSYYRCT YRNIQGCYAT KQVQRDDEDP 180 MQFKVTYKGT HTCTLAPRSK SAPTSPQKQE RNKQNNFSIT HYQQPPDMLL NFQTGLRVDI 240 QNLENQETGF FFPTRDFGYE NHAFTPSTVN NSHPSNSFPQ SFIQSPATSE STYFSTSPCK 300 VSTFGGLNYG QHFESDITEI ISATTSGTNS PIIGIDYSMD PWEGFLSDNQ AFPNSFSQAK 360 E*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MENGCGNYEQ ESLVMELNQG VALAKQLKAQ MSSEILTGET KGMLAERIHS CLEKALLILR  60
LGGSMEQFHQ HLVPSTTAPE SPLSVIGSPK SEDLNPGIHV QQDGREPSRK RKMMPTWTDQ  120
VRACSENAAE GPPEDGYSWR KYGQKDILGA KHPRSYYRCT YRNIQGCYAT KQVQRDDEDP  180
MQFKVTYKGT HTCTLAPRSK SAPTSPQKQE RNKQNNFSIT HYQQPPDMLL NFQTGLRVDI  240
QNLENQETGF FFPTRDFGYE NHAFTPSTVN NSHPSNSFPQ SFIQSPATSE STYFSTSPCK  300
VSTFGGLNYG QHFESDITEI ISATTSGTNS PIIGIDYSMD PWEGFLSDNQ AFPNSFSQAK  360
E*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	113	SRKRKM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11070.1	4e-55	WRKY family protein