PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62010700-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family RAV
Protein Properties Length: 331aa    MW: 37540 Da    PI: 8.8129
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62010700-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23.2e-114592154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                    s+ykGV +   +g W A+I+       +  r++lg+f t+  Aa+a++ a+ kl+
  AUR62010700-RA 45 SKYKGVVYQQ-NGHWGAQIYA------NhHRIWLGTFKTEATAAAAYDSAAIKLR 92
                    89****9988.8******999......44**********99***********997 PP
2B381.11.1e-25146246384
                     EE-..-HHHHTT-EE--HHH.HTT...................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
              B3   3 kvltpsdvlksgrlvlpkkfaeeh...................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                     ++ltpsdv+k++rlv+pk++a ++                   gg++ ++++l+++d + +sW+++++y+k+s+++v+t+GW++Fv+ ++L+++D
  AUR62010700-RA 146 QELTPSDVGKLNRLVIPKRYAIKYfpvkdnngrkfgvcegeeeGGDQGGDMELIFYDNTMKSWNFRYCYWKSSQSFVFTRGWNKFVRVKELEAKD 240
                     5799**********************************9999988889*********************************************** PP

                     EEEEEE CS
              B3  79 fvvFkl 84 
                     +v+F+ 
  AUR62010700-RA 241 VVTFYT 246
                     ****93 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MTKAEASDSN SSNFQPKRPN TIIRPNTVDR LKAVDKPNRQ HSGSSKYKGV VYQQNGHWGA  60
QIYANHHRIW LGTFKTEATA AAAYDSAAIK LRHGNSGDAH RNFPWTALTI YEPNFQAHYS  120
TDQVLNMIKD GSYQTKFGEY LSSISQELTP SDVGKLNRLV IPKRYAIKYF PVKDNNGRKF  180
GVCEGEEEGG DQGGDMELIF YDNTMKSWNF RYCYWKSSQS FVFTRGWNKF VRVKELEAKD  240
VVTFYTCEFR ENEANDVKKF WMIDVVKCNK GNDENVAKNN NVVDKEKGIL HGSELSLVQG  300
EAVETKKNKG LKLFGVQLVP ASCDEDTSYQ *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.18e-80RAV family protein