PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62010677-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 311aa MW: 34717.3 Da PI: 4.7953

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62010677-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.9	2.4e-10	127	173	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+ + + f L ++P + kK +K++iL +A++++k+Lq AUR62010677-RA 127 DHIIAERKRRELLSQMFISLSAIVPGL-----KKIDKISILGEAIKHMKELQ 173 699**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MTSTMTMDAW LAELEIDMDS IDSLINPYYQ SVMDMESTFD EQLAATFFDT ASPQGDIECD 60 VIEQYMSTPP ISDLSENHDD NNNKNDRDNI ASSDVQESQL SKTKQKTKKQ AVSDGPKRKR 120 QPSQVQDHII AERKRRELLS QMFISLSAIV PGLKKIDKIS ILGEAIKHMK ELQEKVKVIE 180 NEVAKRTVES VVLVKGIVDD NVSSSSTMED YCGHGSSDDD GGNSNGSETF SEIDVKVLGK 240 TVLLRIYCEK RKEILAKLLA EIDKHHLVIT NFSVIPFENL ALNITIVAQM EGGFKKNVRD 300 FATTLRNALH *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	136	KRKRQPSQVQDHIIAERKRR
2	117	158	KRKRQPSQVQDHIIAERKRRELLSQMFISLSAIVPGLKKIDK
3	118	137	KRKRQPSQVQDHIIAERKRR
4	132	137	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	4e-45	bHLH family protein