PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62010161-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

M-type_MADS

Protein Properties

Length: 450aa MW: 49854.8 Da PI: 8.2882

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62010161-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.6	1.2e-21	20	65	1	46
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 +r e +snrqvtfskRr g++KKA+EL++LC++++a+i+fs+ k AUR62010161-RA 20 ERMEKDSNRQVTFSKRRCGLFKKASELCTLCGVDAAIIVFSPGKKA 65 57899************************************97765 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MASQPTPPKK TRGRQKIKME RMEKDSNRQV TFSKRRCGLF KKASELCTLC GVDAAIIVFS 60 PGKKAFSFGH PSVETVANHY YFSKFSPSSS SSNQDIKPPL GVGIHRSAGV CDLNLELTLI 120 NRQMEMEKKR NEEMTETMLD LPIEELSLEH LERFKASLEE LKKHVIQQVI VFSPGKKVFS 180 FGHPSVDAVI NRYLMVNTNL NNVNNNARSF GTCHDPSLLN LQITNNNNHT DLEKKRGEEI 240 LKERKGREED FLWISPINAN CFEDLKKIEK SIAKVTDDAY KKYHQCLLRA KQARAIIGPA 300 YTSPPEMVEG QNPIATHFGG ENNPMEGGQF DRHPPLPPYP MEGNQFGGHP PLPSMNPMEG 360 GQFGGHPPLP SMNPIVGGQF GGHPPLPPMN PLEGGQFGGL PPLPPNMKDM DPMPSNFQTF 420 TPYQIGVGSG TNVPVNYPSG FGFGNDKFN*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MASQPTPPKK TRGRQKIKME RMEKDSNRQV TFSKRRCGLF KKASELCTLC GVDAAIIVFS  60
PGKKAFSFGH PSVETVANHY YFSKFSPSSS SSNQDIKPPL GVGIHRSAGV CDLNLELTLI  120
NRQMEMEKKR NEEMTETMLD LPIEELSLEH LERFKASLEE LKKHVIQQVI VFSPGKKVFS  180
FGHPSVDAVI NRYLMVNTNL NNVNNNARSF GTCHDPSLLN LQITNNNNHT DLEKKRGEEI  240
LKERKGREED FLWISPINAN CFEDLKKIEK SIAKVTDDAY KKYHQCLLRA KQARAIIGPA  300
YTSPPEMVEG QNPIATHFGG ENNPMEGGQF DRHPPLPPYP MEGNQFGGHP PLPSMNPMEG  360
GQFGGHPPLP SMNPIVGGQF GGHPPLPPMN PLEGGQFGGL PPLPPNMKDM DPMPSNFQTF  420
TPYQIGVGSG TNVPVNYPSG FGFGNDKFN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	8e-41	M-type_MADS family protein