PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62009831-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 288aa MW: 31815.7 Da PI: 8.702

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62009831-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.2	7.1e-06	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H AUR62009831-RA 78 FVCEICNKGFQRDQNLQLHRRGH 100 89*******************88 PP
2	zf-C2H2	12.9	0.00034	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +++ AUR62009831-RA 154 WKCDKCSKRYAVQSDWKAHSKVC 176 58*****************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MSNLTSAASG DASVSSGNNN NNRVEPSNSF YFPHHHSDDQ QPSEQPPAKR KRNLPGNPDP 60 DAEVIALSPK SLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT NKEVRKKVYV 120 CPETSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK AHSKVCGTRE 180 YRCDCGTLFS SFFHDMMINS ISSSYDHHDD DAFGIAGMLG TSKKGGDDTS SMAAFHHSLG 240 ATRGDDANGX XXXXXXGGGN DGLTRDFLGL RPLSHNDILT IAGLGLY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	117	KLKQRTNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-100	C2H2 family protein