PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62009597-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

WOX

Protein Properties

Length: 677aa MW: 76728.6 Da PI: 6.4614

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62009597-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.1	8.1e-20	37	97	3	57
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+e Le+ + + r+psae++++++++l +++ ++V++WFqN++a++++ AUR62009597-RA 37 SRWNPTKEQIEMLERIYTNegVRTPSAEQIQQITARLrvygHIEGKNVFYWFQNHKARQRQ 97 6**************97779***********************************96 PP
2	Wus_type_Homeobox	108.8	3.1e-35	37	99	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RW+Pt+eQi++Le++y+ +G+rtP++e+iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqkq AUR62009597-RA 37 SRWNPTKEQIEMLERIYTnEGVRTPSAEQIQQITARLRVYGHIEGKNVFYWFQNHKARQRQKQ 99 8**************879***************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence
MEENSRERNN HDLDYDDDVE DQEVEERSPT SSGVGGSRWN PTKEQIEMLE RIYTNEGVRT 60 PSAEQIQQIT ARLRVYGHIE GKNVFYWFQN HKARQRQKQR HDRLLAAAAA NHNHNVNQIS 120 PRFIGAPHLH YHTNHGVNSV MCSPYYHHMP QANLGFYSPP QHHYSAPATP DNDHQDMKKI 180 VGGVDDMGED LLASLSMENH HPSTLLSMDS SSKSHEEKER EISRHVILSR PGPPDINLPL 240 SAERSPPPPQ TWNQEACDML EVGLGTQCAK RLDSVWGAWF FFSFYFKPSL NEKSKSKIVR 300 DGNGVSGFEK SDLQLESFLV QHDMENMYMW VFKERSENAL GKMQLRSYMN GHSRQGERPF 360 PFSVEKGFVR SHKMQRKHYR GLSNPQCLHG IEIVRQPNLS AVDEEEQRRW MELTGRDLSF 420 SLPEEASEFA SWRNLPSTEF ELERLLPALK SSANGHSKKL LNGSGLNLST QPSNHVNDVF 480 DLSAATSKKR KDVPAHGNDE DSCLPANTHS SDGTQDAVEV HPVEPMWAPE FTGVMRNVYG 540 PVTCAKSIYE DDDGYMIVIS LPFTDLQKVK VSWWNAVSHG VVKVTSTSTA CKPYIHRNDR 600 TFKLTDPSPE HCPPGDFKRE IPLPSRIPDD AKLEAYFDNS GTVLEISVPK PRVSREEHEV 660 PICLRSHLGG NDLLLS*

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence

MEENSRERNN HDLDYDDDVE DQEVEERSPT SSGVGGSRWN PTKEQIEMLE RIYTNEGVRT  60
PSAEQIQQIT ARLRVYGHIE GKNVFYWFQN HKARQRQKQR HDRLLAAAAA NHNHNVNQIS  120
PRFIGAPHLH YHTNHGVNSV MCSPYYHHMP QANLGFYSPP QHHYSAPATP DNDHQDMKKI  180
VGGVDDMGED LLASLSMENH HPSTLLSMDS SSKSHEEKER EISRHVILSR PGPPDINLPL  240
SAERSPPPPQ TWNQEACDML EVGLGTQCAK RLDSVWGAWF FFSFYFKPSL NEKSKSKIVR  300
DGNGVSGFEK SDLQLESFLV QHDMENMYMW VFKERSENAL GKMQLRSYMN GHSRQGERPF  360
PFSVEKGFVR SHKMQRKHYR GLSNPQCLHG IEIVRQPNLS AVDEEEQRRW MELTGRDLSF  420
SLPEEASEFA SWRNLPSTEF ELERLLPALK SSANGHSKKL LNGSGLNLST QPSNHVNDVF  480
DLSAATSKKR KDVPAHGNDE DSCLPANTHS SDGTQDAVEV HPVEPMWAPE FTGVMRNVYG  540
PVTCAKSIYE DDDGYMIVIS LPFTDLQKVK VSWWNAVSHG VVKVTSTSTA CKPYIHRNDR  600
TFKLTDPSPE HCPPGDFKRE IPLPSRIPDD AKLEAYFDNS GTVLEISVPK PRVSREEHEV  660
PICLRSHLGG NDLLLS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59340.1	1e-31	WOX family protein