PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62009553-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family GRAS
Protein Properties Length: 529aa    MW: 60259.7 Da    PI: 9.6097
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62009553-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS97.61.8e-30411526259374
            GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                     eal++ys+ f+ ++a+lpr+++er  +E e+ g+ei nvvaceg er++r et++kW+e  ++aG+++vpl+ + +++ k++++  + + + v+e
  AUR62009553-RA 411 EALYHYSSAFEVFDATLPRNAHERLLIESEMYGKEIINVVACEGVERVQRPETYKKWQEHSSRAGLQQVPLDRELVSKTKAMVKANYLKDFFVDE 505
                     89*************************************************************************************777***** PP

            GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                     +++++++gWk+r+  ++S W+
  AUR62009553-RA 506 DKHWMLQGWKGRTFCALSLWK 526
                     ********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    
MAADKGEFKL EKFDGKDFGF WKMQIEDYLY QKKLYQPLEE KKPDGMQEAE WKLLDRQALG  60
VIRLTLSRNV AFNIAKETTM AGLMKALSNM YEKPSASNKV HLMRRLFSLR MSEGGSVAQH  120
LNELNSVTTQ LSSVEIKFDD EVLALILLSS LPDSWNATVT TVSSSSGNNK LKFDDVQSRG  180
RNLIRRNERG RSNYRGQSRD RRSKSRNPNN FQNSKTVECW NCGKIGHYKN QCKGTPKGKE  240
VKAEANVTST GEGDDALICS LESKEESWVL DSGASFHATS NKNFFEKYVH RNLGQVYLGD  300
DQPCDIVGQG NVKIKLNGSA WELKDVKHVP DLRKNLISVG QLAREGSDMN DIIKLKHQLS  360
KEFDMKDLGP AKKILGMRIT RDKQRGTLQL SQSEYIKRVL QKFNMGDAKP EALYHYSSAF  420
EVFDATLPRN AHERLLIESE MYGKEIINVV ACEGVERVQR PETYKKWQEH SSRAGLQQVP  480
LDRELVSKTK AMVKANYLKD FFVDEDKHWM LQGWKGRTFC ALSLWKPC*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.12e-38GRAS family protein