PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62009525-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family ARF
Protein Properties Length: 827aa    MW: 92170.6 Da    PI: 6.7301
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62009525-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.79e-13143228199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k+lt sd++++g +++ +++a+e+  +      +++ +       + +  +++++r++l++GW+ Fv++++L +gD ++F   + +++el+v+
  AUR62009525-RA 143 FCKTLTASDTSTHGGFSVLRRHADECLPP-----LVSFDS----FVLFAM--DGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELRVG 224
                     89*********************999433.....355554....677888..*******************************..449999**** PP

                     EE-S CS
              B3  96 vfrk 99 
                     v+r+
  AUR62009525-RA 225 VRRA 228
                     *996 PP
2Auxin_resp119.13.5e-39253335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a ha+s++++F+v+Y+Pr+s+++F+v++++++++lk+++s+GmRfkm+fe+e+s+e+r++Gt+vg++d++p rW++SkWr+Lk
  AUR62009525-RA 253 ALHAISSGTMFTVYYKPRTSPAQFIVPYDQYMESLKNQYSIGMRFKMRFEGEESPEQRFTGTIVGMEDAHPHRWQDSKWRCLK 335
                     689******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    
MSSSEVASMK ATEEATNKAG KQQQTHTAAG VGTGKVDPET ALYKELWHAC AGPLVTVPRP  60
NELVYYFPQG HIEQVEASTN QAADKQMPNY SLPWKILCRV IDVQLKAELE TDEVYAQVML  120
LPISVKEKGT SPDPQPHFHV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLVSFDSFVL  180
FAMDGQPRRH LLQSGWSVFV SSKRLVAGDA FIFLRGENGE LRVGVRRAMR QQGVVPSSVI  240
SSHSMHLGVL ATALHAISSG TMFTVYYKPR TSPAQFIVPY DQYMESLKNQ YSIGMRFKMR  300
FEGEESPEQR FTGTIVGMED AHPHRWQDSK WRCLKVRWDE TSTMPRPDRV SPWQTEPALT  360
PPTINPLPVT RAKRPRVNVV TQSSESSVHT REGLSKVAAD TSPVGGYSRV LQGHEYPTLR  420
PNLVDSNDSE IAEKPNVWPN SIDDEKADNV KASRKYAYEN WISSMRPEPA YADLLSTFGV  480
HNETASGFHS PYQTAATSPM KKTILDQDGR FSMLGNSWSM MPGSLSLNMS ESNMKVHSPS  540
SNVSYQAQGN VSYGGLSDMA MLRGHRIDNH DGNWLMPPPG QLYFDNHAPT REIAMQPSRN  600
DHEPIKQKDG NYKLFGIPLI SSSTTQDFSA SSKRHLDEPS TPLTPTLHPL YNCESDRSSE  660
QSKGSKQMDN LPACSEQEKR MPSSQSLPRD AQVKGQGHSS RSCTKVLKQG IALGRSVDLS  720
KFNNYDQLVE ELDCLFDFKG ELKNPEKNWL IVYTDEEGDM MLVGDDPWQE FCGMVRKILI  780
YTKEEVQKMT PRQNSKIDEN MPAAGGSDLK EAKQSLPSSE SNAESH*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein