PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62009336-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 413aa MW: 47584.3 Da PI: 7.4544

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62009336-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.3	1.6e-15	62	150	2	88
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 Yn+YA + GF +rk++ +++ +++++ + +vCs g+++e+k+ ++++ ++ + rtgCka+++ +k +g +++ + HnH+ AUR62009336-RA 62 LYNSYAFKHGFGIRKDRLNRRdDKDRTPRQGFLVCSFAGFKQEKKHGEQSKVYQKRNFRTGCKAHIQFDIDKvSGLYVLVNHTMVHNHS 150 7*************999883455555666779*********999999**************99*************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MVYQSEFRHD SNARFVDDAN DYDINDEGEV EGIVNLNEGF TEATESELFD RKVKSDEEAY 60 DLYNSYAFKH GFGIRKDRLN RRDDKDRTPR QGFLVCSFAG FKQEKKHGEQ SKVYQKRNFR 120 TGCKAHIQFD IDKVSGLYVL VNHTMVHNHS RVAVSKRHLI RSHRKVTNEQ VVMMSSLTES 180 SIPVADAVRV LKHQAGGEAN LSFLCRDAYG ALSQHKKMMF DGCDAKRLLS YFKERKSSEY 240 DFFYDFDVDE KGPLQSFFFR DNRMKVDYDA FDRAQNDLSA RAVIEEAIEE CTAKINLLMG 300 EDKDVPPELS KTNEQDVTPE KGDGSLLEPA VIFEQLAEEH GGLEKEHGGF EREHGGIVKE 360 HTVQVDVKDP IKKRKKGQKN TRWKSTQEKV SNKLKGQKIK SWERKAQRVF QR*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MVYQSEFRHD SNARFVDDAN DYDINDEGEV EGIVNLNEGF TEATESELFD RKVKSDEEAY  60
DLYNSYAFKH GFGIRKDRLN RRDDKDRTPR QGFLVCSFAG FKQEKKHGEQ SKVYQKRNFR  120
TGCKAHIQFD IDKVSGLYVL VNHTMVHNHS RVAVSKRHLI RSHRKVTNEQ VVMMSSLTES  180
SIPVADAVRV LKHQAGGEAN LSFLCRDAYG ALSQHKKMMF DGCDAKRLLS YFKERKSSEY  240
DFFYDFDVDE KGPLQSFFFR DNRMKVDYDA FDRAQNDLSA RAVIEEAIEE CTAKINLLMG  300
EDKDVPPELS KTNEQDVTPE KGDGSLLEPA VIFEQLAEEH GGLEKEHGGF EREHGGIVKE  360
HTVQVDVKDP IKKRKKGQKN TRWKSTQEKV SNKLKGQKIK SWERKAQRVF QR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	372	376	KKRKK
2	372	400	KKRKKGQKNTRWKSTQEKVSNKLKGQKIK
3	373	401	KKRKKGQKNTRWKSTQEKVSNKLKGQKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-09	FAR1 family protein