PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008898-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 384aa MW: 41706.1 Da PI: 6.0852

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008898-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.9	2.7e-16	226	272	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq AUR62008898-RA 226 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 272 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MAEDEMATWL HYPLEDLYSD LLGDNNNQTT PTQLPAVAAT SVVRQQPQEA EQIWPPAAIA 60 VVVKPPPVPP PPKPTKNFQM FSRMRGKDPE ASSSLRPELT VVDSNTTPAL VTMKSLGEVS 120 SAFPSGGGIG GSDFVLDRKE SGEVTVSSSS GGYSGGPSKA AAEDARDKGI KNEAEDRKRK 180 RRENDVSLTP STTAIDQDVE LEGDDDDDKK HSRGSHGSKR SRAAEVHNLS ERRRRDRINE 240 KMKALQELIP RCNKSDKASM LDEAIEYLKS LQMQVQVLPS IPPFDTLILV SVKLKLINFY 300 QMMSMGSGPQ FGPRFTVPPI HMPSSPASNF SVNQTSIQAD SVRSSVPVQS PGLPQLPNVA 360 DPLNYVFLDM NKSVKIPAVS STV*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MAEDEMATWL HYPLEDLYSD LLGDNNNQTT PTQLPAVAAT SVVRQQPQEA EQIWPPAAIA  60
VVVKPPPVPP PPKPTKNFQM FSRMRGKDPE ASSSLRPELT VVDSNTTPAL VTMKSLGEVS  120
SAFPSGGGIG GSDFVLDRKE SGEVTVSSSS GGYSGGPSKA AAEDARDKGI KNEAEDRKRK  180
RRENDVSLTP STTAIDQDVE LEGDDDDDKK HSRGSHGSKR SRAAEVHNLS ERRRRDRINE  240
KMKALQELIP RCNKSDKASM LDEAIEYLKS LQMQVQVLPS IPPFDTLILV SVKLKLINFY  300
QMMSMGSGPQ FGPRFTVPPI HMPSSPASNF SVNQTSIQAD SVRSSVPVQS PGLPQLPNVA  360
DPLNYVFLDM NKSVKIPAVS STV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	182	RKRKRR
2	231	236	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	6e-35	bHLH family protein