PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008571-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 457aa MW: 48238.5 Da PI: 8.4105

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008571-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.2	1.8e-10	43	68	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C +++rtG+C +G rC+++H++ AUR62008571-RA 43 GVSDCVYYMRTGFCGFGTRCRYNHPR 68 6789********************96 PP
2	zf-CCCH	40.3	5.2e-13	88	114	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tGtCk+G +CkF+H++ AUR62008571-RA 88 PGEPICQYYLKTGTCKFGTTCKFNHPR 114 5799*********************96 PP
3	zf-CCCH	36.7	7.1e-12	135	160	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ AUR62008571-RA 135 GEKECSYYLKTGQCKFGITCKFHHPQ 160 7899********************97 PP
4	zf-CCCH	37.5	3.8e-12	288	314	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++C+++H+p AUR62008571-RA 288 PGEPECQYYLKTGSCKFGASCRYHHPP 314 5799*********************97 PP
5	zf-CCCH	39.8	7.4e-13	334	359	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++t +C f++++G+Ck+G++CkF H+ AUR62008571-RA 334 PGTQPCTFYMQNGYCKFGPTCKFDHP 359 689**********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MEMYGRNQGS KVDPPAEWGE TGLEESMWRL GLSGRETYPE RPGVSDCVYY MRTGFCGFGT 60 RCRYNHPRDR AAAVAAARLV GGEYPERPGE PICQYYLKTG TCKFGTTCKF NHPRNAGGSL 120 TNAPLNIHGY PLRPGEKECS YYLKTGQCKF GITCKFHHPQ PAGMSMPAAA PPFYPTVQPP 180 SVPIPEPAAG SSPSYRVARP PLVPGSYVPG SYGPVLLSPG VVPMPGWGSY SGPVSPVLSP 240 GGQPAAGGAS VYGVTTLSPS TPGLAGSYAP LPSSAGKSVT EHKFPERPGE PECQYYLKTG 300 SCKFGASCRY HHPPDRGASA AACFLGPLGL PLRPGTQPCT FYMQNGYCKF GPTCKFDHPV 360 GMMKYSPSAS SLAETPIAPY LSGPPLVTLP LSPSSTELLP EHALGSQRDL QSNRTLSSGS 420 SSVGLTSSNV QQSGQGPALL SSSRSIGEDD EVRHSS*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MEMYGRNQGS KVDPPAEWGE TGLEESMWRL GLSGRETYPE RPGVSDCVYY MRTGFCGFGT  60
RCRYNHPRDR AAAVAAARLV GGEYPERPGE PICQYYLKTG TCKFGTTCKF NHPRNAGGSL  120
TNAPLNIHGY PLRPGEKECS YYLKTGQCKF GITCKFHHPQ PAGMSMPAAA PPFYPTVQPP  180
SVPIPEPAAG SSPSYRVARP PLVPGSYVPG SYGPVLLSPG VVPMPGWGSY SGPVSPVLSP  240
GGQPAAGGAS VYGVTTLSPS TPGLAGSYAP LPSSAGKSVT EHKFPERPGE PECQYYLKTG  300
SCKFGASCRY HHPPDRGASA AACFLGPLGL PLRPGTQPCT FYMQNGYCKF GPTCKFDHPV  360
GMMKYSPSAS SLAETPIAPY LSGPPLVTLP LSPSSTELLP EHALGSQRDL QSNRTLSSGS  420
SSVGLTSSNV QQSGQGPALL SSSRSIGEDD EVRHSS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-138	C3H family protein