PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008554-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 1299aa MW: 146136 Da PI: 8.1455

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008554-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.2e-06	18	41	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lCr+ +r G C +G+ C+F H++ AUR62008554-RA 18 MPLCRDNLR-GNCTRGAFCRFLHSE 41 589999999.*************95 PP
2	zf-CCCH	18.9	2.7e-06	170	192	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++f+r G C +G++Ck+ H+ AUR62008554-RA 170 RSPCQHFLR-GKCDFGASCKRWHP 192 689****.********9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1299 aa Download sequence
MVPRRISGDQ LRHDKVQMPL CRDNLRGNCT RGAFCRFLHS ESDEHDRSRF CQNEPEKLGD 60 VSTVGNSQLY RTNEEAGSTA KFSSRGRRSP CRRFQSGRCY RGVSCPYLHP EMPSFHNSRV 120 EQQQVDRAVR DPGFDGRNRD NFGRISLEHV EANKENNSTI MSFSRECRSR SPCQHFLRGK 180 CDFGASCKRW HPVNTYASSR HDLNTQHQGI TETFNYPGSG ERSRDVTLRT SQEHDRENMH 240 NLLRTGAFSR ESREKSPCRN YLRGRCYRGS SCLHLHPVTV YDRPRSDSWS AEQRQVVSGT 300 SRSPHFVDGS IATNFRISQS HDHNNYVNQP CRDTHAFCEQ NKAWLTKDGV QLAGSREEMD 360 VNARSSSYER QRNRLAGNFG CDKPIREVCL QFTKGRCTRG ELCRYLHGFH EYATSTYNWN 420 EKPNAEAARD SGYFGVANQY ANTTTAQDPA GFKNYQSSLG ESSLKASDGW FDMRRVDGLS 480 CEVSGEKNRS FCNSAKGHEN VSLWSRPFKR QRSRSRSPIN LQDDFHSRKF SRCDSRIDLY 540 GGRSRNVAQF QYPDRRSYRY EKPVYHVNGQ QRTCEETSVN PRSCEHYDSK LITPQMHEKV 600 VTQGLQLEQH ANGGVGSNTV IVGMKNEADT VKCALQPSHT NQNEEILAAD SVAVDSSEGA 660 AATPASSQDA LELGSTYSGG KHLISPSASD RTILVHEANA EAPIDSGQEG KDETVELTPS 720 IKTYCRKKSK KRQPISCEEP TREEVIDASK QGVEFCSVVD TSLSKPNIVN VSSIPVDMEM 780 SATRNNGLEN VLMHDHPVKK KFRIRRKKKG PDASCEETRK GEVCNDLKLD TPVCSLEKTS 840 LSNPDIVSVS DIPADVKMSA SNNNDLQNVL MDEDPGIQIS SLLDTSLSDA NTLSLSGVPV 900 EMETSASKNN DLEDVLMRDQ PVQKKVKKKR KKKRPAASCE ETMEVEVTDV SKLGTPICSV 960 VETSISNPNI VSVSEPLEGD VADSSTQVMP ISSLVETSLS IPNIMSGSGV PVDKISASKN 1020 NHLENVPMCD NPVKQQALPL SLKGVVPNSR RKLLVLDVNG ILVDIVVGYS HRYKPDTRVA 1080 TKAVFKRPFC DEFLQFCFDR FDVGIWSSRT RQNLKKVVDF LLEDSKDRLR FCWDQSHCTA 1140 TEYKTLENRE KPLVLKELKY LWWDTKGSRL PWDAGYYNET NTVLLDDSPY KALRNPVTSD 1200 TVLILFTFFG TSVVQPNTAI FPRPYSYKNA GDHSLGPGGD LRNYLERLAE AENVQKFIQE 1260 NPFGQRPISI ASRSWNFYSK IVGNYGRQEE YSNIAPVS*

Sequence ? help Back to Top

Protein Sequence Length: 1299 aa Download sequence

MVPRRISGDQ LRHDKVQMPL CRDNLRGNCT RGAFCRFLHS ESDEHDRSRF CQNEPEKLGD  60
VSTVGNSQLY RTNEEAGSTA KFSSRGRRSP CRRFQSGRCY RGVSCPYLHP EMPSFHNSRV  120
EQQQVDRAVR DPGFDGRNRD NFGRISLEHV EANKENNSTI MSFSRECRSR SPCQHFLRGK  180
CDFGASCKRW HPVNTYASSR HDLNTQHQGI TETFNYPGSG ERSRDVTLRT SQEHDRENMH  240
NLLRTGAFSR ESREKSPCRN YLRGRCYRGS SCLHLHPVTV YDRPRSDSWS AEQRQVVSGT  300
SRSPHFVDGS IATNFRISQS HDHNNYVNQP CRDTHAFCEQ NKAWLTKDGV QLAGSREEMD  360
VNARSSSYER QRNRLAGNFG CDKPIREVCL QFTKGRCTRG ELCRYLHGFH EYATSTYNWN  420
EKPNAEAARD SGYFGVANQY ANTTTAQDPA GFKNYQSSLG ESSLKASDGW FDMRRVDGLS  480
CEVSGEKNRS FCNSAKGHEN VSLWSRPFKR QRSRSRSPIN LQDDFHSRKF SRCDSRIDLY  540
GGRSRNVAQF QYPDRRSYRY EKPVYHVNGQ QRTCEETSVN PRSCEHYDSK LITPQMHEKV  600
VTQGLQLEQH ANGGVGSNTV IVGMKNEADT VKCALQPSHT NQNEEILAAD SVAVDSSEGA  660
AATPASSQDA LELGSTYSGG KHLISPSASD RTILVHEANA EAPIDSGQEG KDETVELTPS  720
IKTYCRKKSK KRQPISCEEP TREEVIDASK QGVEFCSVVD TSLSKPNIVN VSSIPVDMEM  780
SATRNNGLEN VLMHDHPVKK KFRIRRKKKG PDASCEETRK GEVCNDLKLD TPVCSLEKTS  840
LSNPDIVSVS DIPADVKMSA SNNNDLQNVL MDEDPGIQIS SLLDTSLSDA NTLSLSGVPV  900
EMETSASKNN DLEDVLMRDQ PVQKKVKKKR KKKRPAASCE ETMEVEVTDV SKLGTPICSV  960
VETSISNPNI VSVSEPLEGD VADSSTQVMP ISSLVETSLS IPNIMSGSGV PVDKISASKN  1020
NHLENVPMCD NPVKQQALPL SLKGVVPNSR RKLLVLDVNG ILVDIVVGYS HRYKPDTRVA  1080
TKAVFKRPFC DEFLQFCFDR FDVGIWSSRT RQNLKKVVDF LLEDSKDRLR FCWDQSHCTA  1140
TEYKTLENRE KPLVLKELKY LWWDTKGSRL PWDAGYYNET NTVLLDDSPY KALRNPVTSD  1200
TVLILFTFFG TSVVQPNTAI FPRPYSYKNA GDHSLGPGGD LRNYLERLAE AENVQKFIQE  1260
NPFGQRPISI ASRSWNFYSK IVGNYGRQEE YSNIAPVS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	509	514	KRQRSR
2	923	931	QKKVKKKRK
3	924	932	KKVKKKRKK
4	927	933	KKKRKKK
5	928	934	KKKRKKK
6	928	932	KKRKK