PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008353-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

HD-ZIP

Protein Properties

Length: 340aa MW: 37963.8 Da PI: 4.3672

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008353-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.4e-19	94	147	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t eq++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k AUR62008353-RA 94 KKRRLTVEQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 147 56789************************************************9 PP
2	HD-ZIP_I/II	127	8.2e-41	93	184	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv++LE+sFe e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkd+++L++++++lk++ e+L +e+e+L++e+ AUR62008353-RA 93 EKKRRLTVEQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDFDSLQSNFNNLKADYENLLQEKEKLQAEVV 184 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MAGAGVGRVF GGGSSGGVGV GASLLFNPRL PRSSQSPESL FISGSTSNFL GSSSMVSFED 60 VCGGKRSERP FFCTYDQEEN GDEDYDDYFH QPEKKRRLTV EQVQFLEKSF EVENKLEPER 120 KVQLAKDLGL QPRQVAIWFQ NRRARWKTKQ LEKDFDSLQS NFNNLKADYE NLLQEKEKLQ 180 AEVVNLTDKL LLKEKTEGDQ PESPKTYAAS KTVQEEPVIE SASESEDHLA PVFGCKQEDL 240 SSGKSDIIDS DSPHYVDVSH SPFGEPGDSY AFEADHSDIS QDDEDYLSKS LLPSSHVFLK 300 IGDVDYPGPP ATSSCNNYGL PGDDQPSPLF WPYWDINLKM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	150	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	6e-42	HD-ZIP family protein