PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008324-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 362aa MW: 40003.3 Da PI: 6.3126

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008324-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.4	6.9e-08	29	60	15	46
HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwqk 46 +v + G+ +W++++r+ g++R++k+c+ rw++ AUR62008324-RA 29 YVSKQGTTNWNSVPRKTGTKRCGKNCRIRWNN 60 8999************99*********9 PP
2	Myb_DNA-binding	44.7	3.1e-14	73	113	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T++E+el++++++ G++ W +Ia+ ++ gRt++++k++w++ AUR62008324-RA 73 FTQQEEELIIKLHAAVGSR-WGLIAHQLP-GRTENDIKNHWNT 113 8****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MVRPPPCCDK LNARKGAWGE AKDGTTFAYV SKQGTTNWNS VPRKTGTKRC GKNCRIRWNN 60 NNYTRSDLHD EGFTQQEEEL IIKLHAAVGS RWGLIAHQLP GRTENDIKNH WNTKLRKKLT 120 EMGIDPITHK PFSQILADYG NIGGVSRSSD TPKYIGTFRK DLKKASSNTS SLPKPDSFTT 180 PSYTFLSNSQ VSHNNILPMQ NNYATNSSNS HSLDLLSQLQ AISFVTEGPN SDTNVPTNNS 240 SYDFLTLPSP KSSSNSSTSA CSSGYNNAGE MAKSPECFSW HDFLLEEAFK PAQSQVQEQE 300 ENNLAEFLLI NDNRGVDCKE IQAGSSPLIA SSDASSFLEA MLDQENDMFL SFPGLMEEPS 360 Y*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MVRPPPCCDK LNARKGAWGE AKDGTTFAYV SKQGTTNWNS VPRKTGTKRC GKNCRIRWNN  60
NNYTRSDLHD EGFTQQEEEL IIKLHAAVGS RWGLIAHQLP GRTENDIKNH WNTKLRKKLT  120
EMGIDPITHK PFSQILADYG NIGGVSRSSD TPKYIGTFRK DLKKASSNTS SLPKPDSFTT  180
PSYTFLSNSQ VSHNNILPMQ NNYATNSSNS HSLDLLSQLQ AISFVTEGPN SDTNVPTNNS  240
SYDFLTLPSP KSSSNSSTSA CSSGYNNAGE MAKSPECFSW HDFLLEEAFK PAQSQVQEQE  300
ENNLAEFLLI NDNRGVDCKE IQAGSSPLIA SSDASSFLEA MLDQENDMFL SFPGLMEEPS  360
Y*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	1e-55	MYB family protein