PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008287-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

E2F/DP

Protein Properties

Length: 376aa MW: 42077.2 Da PI: 9.5851

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008287-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	74.6	1e-23	22	87	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+++ + + l+++a++L v +rRRiYDi+NVLe+++++++k+kn+++wkg AUR62008287-RA 22 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAANKL---GV--ERRRIYDIVNVLESVGVLARKAKNQYTWKG 87 79***************999********.....****************************98 PP
2	E2F_TDP	78.1	8.4e-25	150	230	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+lltq+f+kl+ +s+ + ++l+e+ak L+ + +++k+RR+YDi+NVL++++liek ++k+++rw g AUR62008287-RA 150 RREKSLGLLTQNFVKLFICSNVDLISLDEAAKILLGDghnstVMRTKVRRLYDIANVLSSMQLIEKthqteTRKPAFRWLG 230 689************************************999********************99999****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MATSPPSSAP EGSGSRHHTY SRKQKSLGLL CSNFLSLYNR DGVESIGLDD AANKLGVERR 60 RIYDIVNVLE SVGVLARKAK NQYTWKGFKG IPKALAALKE EGLRDNFGSS GSGKMKFHVF 120 DDDEDTNSNP DTISQPEAPS NNANSKPDNR REKSLGLLTQ NFVKLFICSN VDLISLDEAA 180 KILLGDGHNS TVMRTKVRRL YDIANVLSSM QLIEKTHQTE TRKPAFRWLG LNERRENTIC 240 GVPMSTETKK RAFGTDVTNI SFKRSKVDFS ANEEGKQLKL QVKTEKVENE FHTNPAEQNA 300 RPRSYQYGPF APVTVAKAGV ADQKDTKRVH DLESLASVYR PQYHNQALRD LFDHYTEAWR 360 SWYSEVAGKS LEQVS*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MATSPPSSAP EGSGSRHHTY SRKQKSLGLL CSNFLSLYNR DGVESIGLDD AANKLGVERR  60
RIYDIVNVLE SVGVLARKAK NQYTWKGFKG IPKALAALKE EGLRDNFGSS GSGKMKFHVF  120
DDDEDTNSNP DTISQPEAPS NNANSKPDNR REKSLGLLTQ NFVKLFICSN VDLISLDEAA  180
KILLGDGHNS TVMRTKVRRL YDIANVLSSM QLIEKTHQTE TRKPAFRWLG LNERRENTIC  240
GVPMSTETKK RAFGTDVTNI SFKRSKVDFS ANEEGKQLKL QVKTEKVENE FHTNPAEQNA  300
RPRSYQYGPF APVTVAKAGV ADQKDTKRVH DLESLASVYR PQYHNQALRD LFDHYTEAWR  360
SWYSEVAGKS LEQVS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	1e-134	E2F/DP family protein