PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008166-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 367aa MW: 41202.3 Da PI: 4.9391

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008166-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132	2.4e-41	240	329	1	90
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q + AUR62008166-RA 240 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQFGSY 329 7************************************************************************************98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MEEHYISKLN FTWPQGSDDS GCALRGSRIQ KFVLRFSSSK ESQEFMESLK SVKERRNCSS 60 LSLSVLNEGV NEEHTPLRLP SINQEHDPYS CSEGVDEEHR PLLLPSIIQE HDPYSCSEEA 120 AQDLAVGNTD VALPQSFSAL LADCCTETNL GIPQVPAEDL NRFYKEVSFR SLTMSIIQLL 180 DASPSCTLQV YADVITSGFN LLRNKHEFMD CEKYMSSNPK TANKKKVDTK MASSSSYNSP 240 CAACKFLRRK CMPGCIFAPY FPPEEPQKFA NVHKIFGASN VTKLLNELLP HQREDAVNSL 300 AYEAEARVRD PVYGCVGAIS YLQRQFGSYY QPSDLNSQMM QPYPYLPWND MNNVDQRGGD 360 DDQGNM*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MEEHYISKLN FTWPQGSDDS GCALRGSRIQ KFVLRFSSSK ESQEFMESLK SVKERRNCSS  60
LSLSVLNEGV NEEHTPLRLP SINQEHDPYS CSEGVDEEHR PLLLPSIIQE HDPYSCSEEA  120
AQDLAVGNTD VALPQSFSAL LADCCTETNL GIPQVPAEDL NRFYKEVSFR SLTMSIIQLL  180
DASPSCTLQV YADVITSGFN LLRNKHEFMD CEKYMSSNPK TANKKKVDTK MASSSSYNSP  240
CAACKFLRRK CMPGCIFAPY FPPEEPQKFA NVHKIFGASN VTKLLNELLP HQREDAVNSL  300
AYEAEARVRD PVYGCVGAIS YLQRQFGSYY QPSDLNSQMM QPYPYLPWND MNNVDQRGGD  360
DDQGNM*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	4e-63	LBD family protein