PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008000-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 457aa MW: 48388.6 Da PI: 8.5453

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008000-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H AUR62008000-RA 69 FVCEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP
2	zf-C2H2	15.7	4.4e-05	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k Hi+ + AUR62008000-RA 145 WKCEKCSKKYAVQSDWKAHIKIC 167 58******************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MPADLDDSSA QTMSNNTGAS GEASVSSSGD QIEPLKPPTR KKRNQPGMPD PDAEVIALSP 60 KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SSKEVKKRVY VCPEISCVHH 120 DPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKKYAVQSDW KAHIKICGTR EYKCDCGTLF 180 SRRDSFITHR AFCDALAEES ARNHPNGKNN ANNNSTKMEI ESKASTSTPI SVTPATTMVS 240 SVLPIQSSAP AASLQSHANP AFSDFIQTMT QPECPPPELP QSAPAEPISL CLATNHGSSI 300 FGPAGQERRQ YAPPPQPAMS ATALLQKAAQ MGANGGSLLR GLGLVSSTSS AGPSDSLQWT 360 SRQVEPETSP VQSGLGLGLP CDEGSGLKEL MIGSSSMFGP KQPTLDFLGL GMAAGGSPNG 420 GLSALITSMG NGLDVAAAAA SFGGPEFAGK DIGRSS*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MPADLDDSSA QTMSNNTGAS GEASVSSSGD QIEPLKPPTR KKRNQPGMPD PDAEVIALSP  60
KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SSKEVKKRVY VCPEISCVHH  120
DPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKKYAVQSDW KAHIKICGTR EYKCDCGTLF  180
SRRDSFITHR AFCDALAEES ARNHPNGKNN ANNNSTKMEI ESKASTSTPI SVTPATTMVS  240
SVLPIQSSAP AASLQSHANP AFSDFIQTMT QPECPPPELP QSAPAEPISL CLATNHGSSI  300
FGPAGQERRQ YAPPPQPAMS ATALLQKAAQ MGANGGSLLR GLGLVSSTSS AGPSDSLQWT  360
SRQVEPETSP VQSGLGLGLP CDEGSGLKEL MIGSSSMFGP KQPTLDFLGL GMAAGGSPNG  420
GLSALITSMG NGLDVAAAAA SFGGPEFAGK DIGRSS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-142	C2H2 family protein