PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62007636-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SRS

Protein Properties

Length: 245aa MW: 26367.2 Da PI: 5.8103

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62007636-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	75	2.2e-23	79	118	3	42
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkst 42 +g++sCqdCGnqakkdC+++RCRtCCksrgfdCathvks AUR62007636-RA 79 AGNISCQDCGNQAKKDCVYMRCRTCCKSRGFDCATHVKSM 118 7899**********************************96 PP
2	DUF702	89.1	9.8e-28	118	172	100	154
DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +e+ ++P+evss+avfrcvrvssvd+ ++e+aYqtav+igGhvfkGiLyd+G+++ AUR62007636-RA 118 MEVGNFPAEVSSSAVFRCVRVSSVDETDDEYAYQTAVNIGGHVFKGILYDHGVDH 172 67889************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MAEFFSLGTG SSAGNNNNIT YRNEQIHGYQ QHETKVSSEE LWQHLPYSQL RIAPTEEGGD 60 ETTRSGLMMM RMTSTSSGAG NISCQDCGNQ AKKDCVYMRC RTCCKSRGFD CATHVKSMEV 120 GNFPAEVSSS AVFRCVRVSS VDETDDEYAY QTAVNIGGHV FKGILYDHGV DHSHQVNTPS 180 PNYGAGETSS GANLAASMAP PTSISAMPTS SSSLPVGYLD PSYYPLPLNT YLGPGTPFFP 240 NPRP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	7e-42	SRS family protein