PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62007560-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family GRAS
Protein Properties Length: 558aa    MW: 60789.2 Da    PI: 4.3843
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62007560-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.11.3e-1091905561373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++Ll+cA+ v+++d e+a + L rl++ +s++gdp+qR+a+yfteAL+ rl+     +++++  +++    s+e + ++k++++++P+ kf+h
  AUR62007560-RA 190 LITALLDCAR-VAESDPERAVKSLVRLRDSVSQHGDPTQRVAFYFTEALSCRLSP---PISSSIVQTTA----SEECTLSYKALNDACPFSKFAH 276
                     5789*****9.7888***************************************9...66666655555....5799999*************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                     ltaNqaIlea++g+e++Hi+Df+i qG+QW+aLlqaLa+Rp g+p ++Ri g+ +p+ g   + +l +tg+rL++fA+ l+++fef++ v + ++
  AUR62007560-RA 277 LTANQAILEATDGAEKIHIVDFGIVQGVQWAALLQALATRPTGKPnKIRISGIPAPALGesPASALFATGNRLREFAKVLELNFEFEP-VLTPIQ 370
                     *****************************************66665**********99998999************************.799*** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     +l+ +++rv+p+E+l Vn++lql++llde++   +   + Lkl ksl+Pk+v++ e e+ +n+  +l+rf  a++yys++f+sle ++ r+s +r
  AUR62007560-RA 371 ELTESNFRVDPDEVLTVNFMLQLYNLLDETTIEVE---AALKLAKSLKPKIVTLGEYEVGLNRVGYLTRFKTAIKYYSSVFESLEPNMDRDSVDR 462
                     ***************************77665555...9******************************************************** PP

            GRAS 283 ikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                     + vEr ++gr+i+  v  e    rrer+e +e+W+  le+aGF+pv+ls++a++qak ll +++ s  y++ ++   ++ l W+d pL+svS+W
  AUR62007560-RA 463 VQVERLIFGRRIMGSVGPELPGtRRERMECKEEWKGLLENAGFEPVTLSHYANSQAKILLWNYNySSSYKLVDSPPGFLsLAWNDVPLLSVSSW 556
                     *******************8766*****************************************9999**9988766666************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    
MSTSPPPPLG FGGGGPPFHD PFQVGPPPPD ANEPWLDHTS TTSFRFADFC DGAPGEFDSD  60
EWMESLMSAG GGAVEAGNND GSNLQSACDA WQGVSGAADF SLYDGVNADP FATCPNRINV  120
AISPPSDLAR VIYSDADKTV TTQPWVPPSP PLKDPQSQPL EPPQNQNDAA AVAAAIAEEE  180
QEQEHSWPPL ITALLDCARV AESDPERAVK SLVRLRDSVS QHGDPTQRVA FYFTEALSCR  240
LSPPISSSIV QTTASEECTL SYKALNDACP FSKFAHLTAN QAILEATDGA EKIHIVDFGI  300
VQGVQWAALL QALATRPTGK PNKIRISGIP APALGESPAS ALFATGNRLR EFAKVLELNF  360
EFEPVLTPIQ ELTESNFRVD PDEVLTVNFM LQLYNLLDET TIEVEAALKL AKSLKPKIVT  420
LGEYEVGLNR VGYLTRFKTA IKYYSSVFES LEPNMDRDSV DRVQVERLIF GRRIMGSVGP  480
ELPGTRRERM ECKEEWKGLL ENAGFEPVTL SHYANSQAKI LLWNYNYSSS YKLVDSPPGF  540
LSLAWNDVPL LSVSSWH*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein