PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62007558-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 323aa MW: 36263.4 Da PI: 6.3611

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62007558-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.3	2.3e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ +++q G+g +W + ++++g++R++k+c++rw++yl AUR62007558-RA 14 KGPWSPEEDATLKAYIEQKGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.7	4.7e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eE+ ++ + G++ W+ Ia+ ++ gRt++++k++w++ AUR62007558-RA 69 GGFTEEEENIICSLYLSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDATLKAYIE QKGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FTEEEENIIC SLYLSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLMAK 120 QRKEQTACRI IEQEIKRESE TFMVNQTLNQ VPYWAEQQTS MPMMHPSLAA HHLGNQDQLT 180 RLLTKIGGQF YDDSQLINNS GSYQYPTQDQ LYVLDLSNAQ ASSAVAINST TNVNFTQWLN 240 TEYDVNGVSM NMHQGQESFP PEFEAYFSNQ SRFDGNESYS GVEVGNNSST TSNSAGSNSW 300 EDMSSLVNTP ASSFDAYQNG ML*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	5e-87	MYB family protein