PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62007542-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

AP2

Protein Properties

Length: 411aa MW: 44736.6 Da PI: 9.0225

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62007542-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	40.2	8.2e-13	137	193	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++t+e+Aa+a++ a++k++g AUR62007542-RA 137 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDTEEKAARAYDMAALKYWG 193 78*****************87776664446655.77****************98 PP
2	AP2	47.9	3.4e-15	236	287	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g AUR62007542-RA 236 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 287 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MGETEISAGL RNWVQRSYIG CMGSVDADNQ INGGDHQSVS VSSNGGPGNG PGAGPMGGIG 60 YADLQSLSLS MSPGSQSSCV SGSHQHQITP TNVTAMGTES SCLGMEISRK RGGERIEHNT 120 KQIVHRKSLD TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQSRKGR QGGYDTEEKA 180 ARAYDMAALK YWGSSTHINF PLENYQQQLE DMKNMTRQEF VAHLRRKSSG FSRGASIYRG 240 VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGTNA VTNFDIARYD 300 VDRIMASSTL LATQAHDAML GSAQQEIGGG AHYSNTSSLV TSLSSSREES PEKNTNSSLP 360 LAFTMPPSAT KLFANPAANI GTWINQPVEL RAPSISLPQM PVFAAWADLH *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MGETEISAGL RNWVQRSYIG CMGSVDADNQ INGGDHQSVS VSSNGGPGNG PGAGPMGGIG  60
YADLQSLSLS MSPGSQSSCV SGSHQHQITP TNVTAMGTES SCLGMEISRK RGGERIEHNT  120
KQIVHRKSLD TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQSRKGR QGGYDTEEKA  180
ARAYDMAALK YWGSSTHINF PLENYQQQLE DMKNMTRQEF VAHLRRKSSG FSRGASIYRG  240
VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGTNA VTNFDIARYD  300
VDRIMASSTL LATQAHDAML GSAQQEIGGG AHYSNTSSLV TSLSSSREES PEKNTNSSLP  360
LAFTMPPSAT KLFANPAANI GTWINQPVEL RAPSISLPQM PVFAAWADLH *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-133	AP2 family protein