PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62007068-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

GRF

Protein Properties

Length: 370aa MW: 39862.4 Da PI: 8.2356

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62007068-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	70.3	2.4e-22	96	140	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgr.srsrkske 44 d+ep+rCrRtDGKkWRCsr+v + +k+CErH h+gr srsrk++e AUR62007068-RA 96 DPEPWRCRRTDGKKWRCSRDVAPEQKYCERHSHKGRpSRSRKPVE 140 79*********************************9557777766 PP
2	QLQ	44	6.9e-16	24	59	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FTa Q q+L++Q +yKy++a +PvPpeLl +++k AUR62007068-RA 24 TFTAIQRQELERQTIIYKYMMAAMPVPPELLIPLSK 59 5******************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
NRSPSPTISG FSSVSRFGDG GRVTFTAIQR QELERQTIIY KYMMAAMPVP PELLIPLSKY 60 PSISTSTITT TSSPSVGRKA GVEMRYAGAG RGGGGDPEPW RCRRTDGKKW RCSRDVAPEQ 120 KYCERHSHKG RPSRSRKPVE STTSAATLPV TTTPSVSSCN PIIFTPFSIP KPSSHSFDLP 180 SPTQFNSFPR YPDWFTKKEV APTTTACLYP QQIGGVDTTR TSSIVEDHNQ SCLLPRPFID 240 AWSLGDHGDP KDGSNSIDNT NNCPTPSSPL NSILPLTLSM SAGVDHDHDN SEDNTKDHPE 300 IRLSSSSHHH QPLNWMNSWI GSPAAPGGPL AEALCLGISG SGNGRKVSHL DELVSPHGHS 360 TSSSTTTLG*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

NRSPSPTISG FSSVSRFGDG GRVTFTAIQR QELERQTIIY KYMMAAMPVP PELLIPLSKY  60
PSISTSTITT TSSPSVGRKA GVEMRYAGAG RGGGGDPEPW RCRRTDGKKW RCSRDVAPEQ  120
KYCERHSHKG RPSRSRKPVE STTSAATLPV TTTPSVSSCN PIIFTPFSIP KPSSHSFDLP  180
SPTQFNSFPR YPDWFTKKEV APTTTACLYP QQIGGVDTTR TSSIVEDHNQ SCLLPRPFID  240
AWSLGDHGDP KDGSNSIDNT NNCPTPSSPL NSILPLTLSM SAGVDHDHDN SEDNTKDHPE  300
IRLSSSSHHH QPLNWMNSWI GSPAAPGGPL AEALCLGISG SGNGRKVSHL DELVSPHGHS  360
TSSSTTTLG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	2e-28	GRF family protein