PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62006825-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 620aa MW: 67326.8 Da PI: 6.8284

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62006825-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.2	4.5e-16	444	490	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq AUR62006825-RA 444 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 490 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence
MPLTELVRMF KGKVDVTNEA ASTSIDPSSR PDTDCVELVW ENGQLMMQGN KARKSSNSNN 60 FQTYGLKSQD GRSGTNCSKM AKFGTMDSVI GDFPMSVPSC EMGLDEDVDL VPWLNYPMEE 120 TLHNDYTSDF LNELSGVTIN DLPTDNHLAY RERKISFHGD DHDNSASLKH NNTSKDYSSN 180 EKNNRGGSIE VPQFMFPFQQ SVPRSGISDI TGSNASNTHH VGSRDSGLNP SSLSAFTSLR 240 LQKLDAGQPS TTSSGFTNFP CFSRPAALSR ANHVTVNPSK RLEDGNKRCT FSSNPANSTL 300 VNLDSGYSQK EPISHNQSIM APTNNNSIAL PTKPRAEELL SANQPMCRED IAKNQASQNQ 360 VCDSPMSKVG TSGDRIMEPV VATSSVCSAN SAERTSNEPA RNSKRKSRET ESEDPSEEIE 420 EESVGGKKPS HGRGGSKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC NKADKASMLD 480 EAIEYLKTLQ LQVLSMGAGI TKMVPFQSPH YAIPGTGAMF HGMPGSNLQA FPHHGQGLAM 540 SMQQTPTVSV PMGSFSKIPI GLNASGVGGS SNATHLAPSS SKKDANPQVI SSMDSNNVNS 600 SMNQATNQVF AFFAYIWIF*

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence

MPLTELVRMF KGKVDVTNEA ASTSIDPSSR PDTDCVELVW ENGQLMMQGN KARKSSNSNN  60
FQTYGLKSQD GRSGTNCSKM AKFGTMDSVI GDFPMSVPSC EMGLDEDVDL VPWLNYPMEE  120
TLHNDYTSDF LNELSGVTIN DLPTDNHLAY RERKISFHGD DHDNSASLKH NNTSKDYSSN  180
EKNNRGGSIE VPQFMFPFQQ SVPRSGISDI TGSNASNTHH VGSRDSGLNP SSLSAFTSLR  240
LQKLDAGQPS TTSSGFTNFP CFSRPAALSR ANHVTVNPSK RLEDGNKRCT FSSNPANSTL  300
VNLDSGYSQK EPISHNQSIM APTNNNSIAL PTKPRAEELL SANQPMCRED IAKNQASQNQ  360
VCDSPMSKVG TSGDRIMEPV VATSSVCSAN SAERTSNEPA RNSKRKSRET ESEDPSEEIE  420
EESVGGKKPS HGRGGSKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC NKADKASMLD  480
EAIEYLKTLQ LQVLSMGAGI TKMVPFQSPH YAIPGTGAMF HGMPGSNLQA FPHHGQGLAM  540
SMQQTPTVSV PMGSFSKIPI GLNASGVGGS SNATHLAPSS SKKDANPQVI SSMDSNNVNS  600
SMNQATNQVF AFFAYIWIF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	449	454	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-33	bHLH family protein