PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62006633-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB_related

Protein Properties

Length: 627aa MW: 69668.4 Da PI: 6.5515

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62006633-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.4	3.3e-13	575	622	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 r++WT+eE+++l +avk++G++ W I kgRt ++k++w++ AUR62006633-RA 575 RKKWTPEEEDKLREAVKEYGKN-WIMIKDIYEdifKGRTNVNLKDKWRN 622 789***************99.***********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence
MDEKVAKWIL EFLLRMPIDE KIINGVLSSL PFSNKDSRLK KTILLRKIES ETSNGSVSEK 60 LLELLEFLEE LNHRAGKTAS DLMKKAYCAV AVDCTVRFLE ENVEENGKYF EAVERIWRNR 120 VCKMEGLSSE ESNQWLADVE AAVWDAGVCE KILMRNTRNE ALKAVRGYLK EAWKCMGPTF 180 LELVASKFGY EVEKLGFCED GGGDVVGSDN PCRELAASQG GLLKGQTLVR RKHVAVKTRH 240 PRGAKISEAN EEAESSMNVV NDVPTCELEK VQEAFQSNSL QPHATVSGFR AGASQAAHNV 300 SCKDNDVLNH GMGKIKEAHQ SNSLQPHAAV SDSHIGASQA AHNLSCKDNG VPIHKMDEVQ 360 EALQSLQPHT AVIDSCLDAS QDHDPSSTKA TDNTSSVDAT NEQTRPPVVH VTPEVRRVQE 420 ALKTSSRELH VSVTDPLPKA LEIAKTLPCT GAAGNHDTSH TPAVENHDMN NDAVLPKQTQ 480 PVIHAPRETI ENNSENVEKK DKLTGNARGS ETRTPKERPK RCIMEPNGTS HTYEWDDSDD 540 NVGRGGLCLP PSPKRSRPSA LDPYAEKKFH AMRERKKWTP EEEDKLREAV KEYGKNWIMI 600 KDIYEDIFKG RTNVNLKDKW RNMSKS*

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence

MDEKVAKWIL EFLLRMPIDE KIINGVLSSL PFSNKDSRLK KTILLRKIES ETSNGSVSEK  60
LLELLEFLEE LNHRAGKTAS DLMKKAYCAV AVDCTVRFLE ENVEENGKYF EAVERIWRNR  120
VCKMEGLSSE ESNQWLADVE AAVWDAGVCE KILMRNTRNE ALKAVRGYLK EAWKCMGPTF  180
LELVASKFGY EVEKLGFCED GGGDVVGSDN PCRELAASQG GLLKGQTLVR RKHVAVKTRH  240
PRGAKISEAN EEAESSMNVV NDVPTCELEK VQEAFQSNSL QPHATVSGFR AGASQAAHNV  300
SCKDNDVLNH GMGKIKEAHQ SNSLQPHAAV SDSHIGASQA AHNLSCKDNG VPIHKMDEVQ  360
EALQSLQPHT AVIDSCLDAS QDHDPSSTKA TDNTSSVDAT NEQTRPPVVH VTPEVRRVQE  420
ALKTSSRELH VSVTDPLPKA LEIAKTLPCT GAAGNHDTSH TPAVENHDMN NDAVLPKQTQ  480
PVIHAPRETI ENNSENVEKK DKLTGNARGS ETRTPKERPK RCIMEPNGTS HTYEWDDSDD  540
NVGRGGLCLP PSPKRSRPSA LDPYAEKKFH AMRERKKWTP EEEDKLREAV KEYGKNWIMI  600
KDIYEDIFKG RTNVNLKDKW RNMSKS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	4e-18	MYB_related family protein