PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62005990-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB_related

Protein Properties

Length: 749aa MW: 83790.2 Da PI: 4.536

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62005990-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.5	3.4e-09	520	563	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rWT+++ el+++ q+G++ + I + ++ gRt+ q+k+++ k AUR62005990-RA 520 RARWTKQDTELFYQSLSQFGSD-LSMIQQLFP-GRTRHQIKLKYKK 563 569*****************.*****.*********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence
MDSLDDPFAE PVVAKAPAID RFQPKAKPRP KKGPSVAVKA TKEPPVTSVL QLNQSNDNVE 60 KKLEDLKSSS LTENESSGLP AEAQEVSGSA VTGHSEIAGP STKEAETPTA NAPGVHSEKE 120 LSDFHSVSSA SVSLLRPCNA LAAPDQHEDQ TFENQEVYKE SMECGDDGDL QIDVEQLEAG 180 DFSCLDSTDI MTEGAAASGT RAVKFKPKPK AQSDRRKKDS AEAVSHLPHS QNLPSESEHM 240 TSDGSIHARE PNTVSDVVHM RLDGNFSLDP SVYQPDTVVS EDIDSLMPEK LPQQSGEDHR 300 EQNSYDALGS SAKSVDEGFL SAFEGNEDGY EPLDGINGGF NNIYSSYDKA SDNSALNRDE 360 NNDGDHIGEE TLQKKQPRKS KKVTVENNKP ARKRKKATQE LNESVEKPPK KFPRATRRKR 420 CVDKSLLEAP EDELDLQRVP IRDLIILAEY KERQAKKEAA AAMPPPTSER NNNLSPEDLP 480 YDDNETFDQD GDTYDNPSTL RVQKDTGYFN YQSFMTKETR ARWTKQDTEL FYQSLSQFGS 540 DLSMIQQLFP GRTRHQIKLK YKKEERQNPM RVHDALTSRT QDISHFELVI KRLQEQAAQD 600 EKIDNDDPVC VTGKDEGPEE VSNANEDVAN AKQNEEAHVV DQESPKLHYS EDEDYDWSSY 660 KNMRALDELR KLKLFFKDES SHGLSVSDLY ELIQHADNVL PRLLNSFLAI YVFWFVIRAI 720 IVLEVKLCYS LTEHFGDDDA TQIDLDLD*

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence

MDSLDDPFAE PVVAKAPAID RFQPKAKPRP KKGPSVAVKA TKEPPVTSVL QLNQSNDNVE  60
KKLEDLKSSS LTENESSGLP AEAQEVSGSA VTGHSEIAGP STKEAETPTA NAPGVHSEKE  120
LSDFHSVSSA SVSLLRPCNA LAAPDQHEDQ TFENQEVYKE SMECGDDGDL QIDVEQLEAG  180
DFSCLDSTDI MTEGAAASGT RAVKFKPKPK AQSDRRKKDS AEAVSHLPHS QNLPSESEHM  240
TSDGSIHARE PNTVSDVVHM RLDGNFSLDP SVYQPDTVVS EDIDSLMPEK LPQQSGEDHR  300
EQNSYDALGS SAKSVDEGFL SAFEGNEDGY EPLDGINGGF NNIYSSYDKA SDNSALNRDE  360
NNDGDHIGEE TLQKKQPRKS KKVTVENNKP ARKRKKATQE LNESVEKPPK KFPRATRRKR  420
CVDKSLLEAP EDELDLQRVP IRDLIILAEY KERQAKKEAA AAMPPPTSER NNNLSPEDLP  480
YDDNETFDQD GDTYDNPSTL RVQKDTGYFN YQSFMTKETR ARWTKQDTEL FYQSLSQFGS  540
DLSMIQQLFP GRTRHQIKLK YKKEERQNPM RVHDALTSRT QDISHFELVI KRLQEQAAQD  600
EKIDNDDPVC VTGKDEGPEE VSNANEDVAN AKQNEEAHVV DQESPKLHYS EDEDYDWSSY  660
KNMRALDELR KLKLFFKDES SHGLSVSDLY ELIQHADNVL PRLLNSFLAI YVFWFVIRAI  720
IVLEVKLCYS LTEHFGDDDA TQIDLDLD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	218	KPKPKAQSDRRKK
2	391	397	ARKRKKA
3	392	396	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	3e-44	MYB_related family protein