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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | AUR62005875-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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| Family | bHLH | ||||||||
| Protein Properties | Length: 279aa MW: 31090.9 Da PI: 9.105 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 28.3 | 3.2e-09 | 88 | 134 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h ++Er+RR+ +++ f L +lP + kK +K ++L +A++++k+Lq
AUR62005875-RA 88 DHIMAERKRRQLLRHMFISLSAILPGL-----KKIDKTTVLGEAIKHMKELQ 134
699************************.....9******************9 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 279 aa Download sequence |
METDPNNPSL INNPYQQSET MEPSFEEQLA ATLGNDFPYY PIFATTVPAF PEGNIHQSPR 60 ENKKETTMKQ AVSSAGAKRK RRPSQVQDHI MAERKRRQLL RHMFISLSAI LPGLKKIDKT 120 TVLGEAIKHM KELQEKVKVL ESVIAKRTME SVVAVVKKSK LIIDNGSSDD NVSSSTVDDY 180 CGNGDDSFPE IQVKVMGKTL LLRVLCEKQK GILAKLFAEI DNQDLTITNF SVVPFESLAL 240 HVTIVAQMES GFNKNVRDLV RILGNAIASK WLISNCMR* |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 78 | 83 | KRKRRP |
| 2 | 78 | 97 | KRKRRPSQVQDHIMAERKRR |
| 3 | 78 | 119 | KRKRRPSQVQDHIMAERKRRQLLRHMFISLSAILPGLKKIDK |
| 4 | 79 | 98 | KRKRRPSQVQDHIMAERKRR |
| 5 | 79 | 120 | KRKRRPSQVQDHIMAERKRRQLLRHMFISLSAILPGLKKIDK |
| 6 | 80 | 99 | KRKRRPSQVQDHIMAERKRR |
| 7 | 93 | 98 | ERKRRQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G37850.1 | 4e-45 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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