PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62005756-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

TCP

Protein Properties

Length: 284aa MW: 30551.3 Da PI: 8.2865

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62005756-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.7	1e-38	49	178	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 a+ +++++++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++tieWLlqqa+p+++++tgt++++a+++ + s + s+s+ s+g AUR62005756-RA 49 APNRTSSKDRHTKVDGRGRRIRMPAQCAARVFQLTRELGHRSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLSLSVRRSGSTVSAGshtrpvg 143 7899*****************************************************************88863333333333222223334444 PP TCP 89 ..................................k 89 + AUR62005756-RA 144 fnnsnyfgnnfyvspsnwmgfsnmlminagdqlsN 178 44444555555555555555555555555555550 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MEDDHHQNST FPLHLLTQNN NKLDSIENPE HTSTTVLQSG SSSGQKKPAP NRTSSKDRHT 60 KVDGRGRRIR MPAQCAARVF QLTRELGHRS DGETIEWLLQ QAEPSVIAAT GTGTIPANFT 120 SLSLSVRRSG STVSAGSHTR PVGFNNSNYF GNNFYVSPSN WMGFSNMLMI NAGDQLSNSS 180 RQINLFPNNG LELSSTNSST MLNLQHPSRD GDTCHGSGNN STTTTWPYPN TSSNGNGTVA 240 SQYGMLGGFN NGLRGVIPGT IIGSYPHQER SNNNNVDHGD ASS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	2e-47	TCP family protein