PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62004915-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 231aa    MW: 25576 Da    PI: 8.461
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62004915-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.46.8e-223078149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+i nk  rqvtf+kRr g++KKA EL+ LC+ evavi fs  gkly +
  AUR62004915-RA 30 KPIINKASRQVTFTKRRGGLFKKAAELCSLCGSEVAVITFSGAGKLYSF 78
                    6799*******************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MEDQTLNFPE DFLVDPIIKK RAGKRKIEKK PIINKASRQV TFTKRRGGLF KKAAELCSLC  60
GSEVAVITFS GAGKLYSFGH PNADTIVNRY INYTAGIING GNENENNYFG TGGVPSEQYK  120
RVLSDIEVEK KRTNGISPHG DNCEVGFWWD KPIDNLGLLE LEELKIIDLK ISMYTGCEEY  180
GSRLASPPTI ATTSTSPTAE AAATTSSNNR DRFHLQPRCF HLLQPQRTSL *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-26M-type_MADS family protein