PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62004743-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family ARF
Protein Properties Length: 830aa    MW: 92163.8 Da    PI: 6.4745
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62004743-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.4e-23128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  AUR62004743-RA 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  AUR62004743-RA 219 KNQLLLGIRRA 229
                     9999****997 PP
2Auxin_resp93.14.5e-312873541783
      Auxin_resp  17 PrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     P+as+seF+++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  AUR62004743-RA 287 PWASPSEFIIPLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 354
                     9******************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    
MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVCLPTAG SRVVYFPQGH SEQVAATTNR  60
DIDGQIPNYP SLPAQLICQL HNVTMHADVE TDEVYAQMTL QPLSPQEQKD IYLPADFGIP  120
SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPAQELIA RDLHDVEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAANT NSCFTVFFNP RSVPYRHCLV LLALGFPWAS PSEFIIPLSK  300
YVKAVYHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL DSVRWPNSHW RSVKVGWDES  360
TAGERQPRVS LWEIEPLTTF PMYPSLFPLR LKRPWHAGTS SLSDNIDDAA NSLMWLRGQG  420
GEQGLNSMNF QSLGMFPWMQ SRVDNMLPLG NQNQQYQALL SSNFQNLRGG GDVLNPQIMQ  480
FQQPMQYLPQ STSQLPMLQQ QQQMIHPSIA QQFMQGQSQV SKDNLPQRVL PQEYFKHNEG  540
LANQQLCGPE AFSLSNNGMQ SRQQHTMSSS LGKADTSTAN AELSTHSPVQ NIMSSTCTEG  600
ISNLSDMSNV NHTMLNEQTS QHPLVSMNSY TPANAFGDAV SLPPYPGKEA SLETGNCSLD  660
VQNHNVFGAN LDSSGLVLPM TMPTNYRTSS NDTDLCSIPS GASGFQLSMY GCNSNSPELH  720
SEGQGDLSTP TRTFVKVYKS GSVGRSLDIS RFSSYHELRE ELGQMFGIEG KLDDPLRSGW  780
QLVFVDREND VLLLGDDPWE AFVYNVSYIK ILSPEDVQKL GKHGTETYS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein