PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62004660-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 525aa MW: 58493.4 Da PI: 6.1715

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62004660-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	8.8e-07	280	301	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H AUR62004660-RA 280 FCTICGKGFKRDANLRMHMRGH 301 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MDVKDRPNSE NWTEPSTFGN EVQQNASLNN QPFTNFTSQE PSKWEDPSIL DYSMRIDSSF 60 SKYNPPSENS SLFVGNPSNQ GKIPNQDGAQ MNQMPDGSNF DPRAMLNNLS FLEQKIHQLQ 120 ELVHMIVGRK AQVPGNQEEV VIQQQQHQLI TADLTSIIVQ LISAAGSLLP SMKHNLSAAN 180 SSLLLNRTLF PSATTVGTSM ISQNNIGQVK QVVGEVKPVE QSNQVEVTAN CVSEMNCNNM 240 EEDHELKDDD DGKEEEHLPP GSYEILQLEK EEILAPHTHF CTICGKGFKR DANLRMHMRG 300 HGDEYKTPAA LAKPNKESSS EKVLLKRYSC PFVGCKRNKE HKKFQPLKTI LCVKNHYKRT 360 HCDKSYICSR CHTKKFSVIA DLKTHEKHCG RDKWLCSCGT TFSRKDKLFG HIALFQGHTP 420 AIPSEEHKGT SVPSNLSDNS ETTNTVANMG FSFGSNGTNE NGAQIMMDGK GNVDDPFFSL 480 LNYEYSLGGL QDFPLTNFDD SPSSFSFLNS EEKDGMMCVS NDVH*

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MDVKDRPNSE NWTEPSTFGN EVQQNASLNN QPFTNFTSQE PSKWEDPSIL DYSMRIDSSF  60
SKYNPPSENS SLFVGNPSNQ GKIPNQDGAQ MNQMPDGSNF DPRAMLNNLS FLEQKIHQLQ  120
ELVHMIVGRK AQVPGNQEEV VIQQQQHQLI TADLTSIIVQ LISAAGSLLP SMKHNLSAAN  180
SSLLLNRTLF PSATTVGTSM ISQNNIGQVK QVVGEVKPVE QSNQVEVTAN CVSEMNCNNM  240
EEDHELKDDD DGKEEEHLPP GSYEILQLEK EEILAPHTHF CTICGKGFKR DANLRMHMRG  300
HGDEYKTPAA LAKPNKESSS EKVLLKRYSC PFVGCKRNKE HKKFQPLKTI LCVKNHYKRT  360
HCDKSYICSR CHTKKFSVIA DLKTHEKHCG RDKWLCSCGT TFSRKDKLFG HIALFQGHTP  420
AIPSEEHKGT SVPSNLSDNS ETTNTVANMG FSFGSNGTNE NGAQIMMDGK GNVDDPFFSL  480
LNYEYSLGGL QDFPLTNFDD SPSSFSFLNS EEKDGMMCVS NDVH*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-162	C2H2 family protein